saveSimulation: Save the data for a simulation for later use. When simulating...
In sim1000G: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Description
Usage
Arguments
Examples
Description
Save the data for a simulation for later use. When simulating multiple populations it
allows saving and restoring of simulation data for each population.
Usage
1
saveSimulation(id)
Arguments
id
Name the simulation will be saved as.
Examples
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examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
# For realistic data use the functions downloadGeneticMap
generateUniformGeneticMap()
startSimulation(vcf, totalNumberOfIndividuals = 200)
ped1 = newNuclearFamily(1)
saveSimulation("sim1")
sim1000G documentation built on June 10, 2019, 1:01 a.m.
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Description Usage Arguments Examples
Description
Save the data for a simulation for later use. When simulating multiple populations it allows saving and restoring of simulation data for each population.
Usage
1 | saveSimulation(id)
|
Arguments
id |
Name the simulation will be saved as. |
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
min_maf = 0.12 ,max_maf = NA)
# For realistic data use the functions downloadGeneticMap
generateUniformGeneticMap()
startSimulation(vcf, totalNumberOfIndividuals = 200)
ped1 = newNuclearFamily(1)
saveSimulation("sim1")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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