loadSimulation: Load some previously saved simulation data by function...

Description Usage Arguments Examples

Description

Load some previously saved simulation data by function saveSimulation

Usage

1

Arguments

id

Name the simulation to load which was previously saved by saveSimulation

Examples

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examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")

vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
           min_maf = 0.12 ,max_maf = NA)

# For a realistic genetic map
# use the function readGeneticMap
generateUniformGeneticMap()

startSimulation(vcf, totalNumberOfIndividuals = 200)

ped1 = newNuclearFamily(1)

saveSimulation("sim1")

vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
               min_maf = 0.02 ,max_maf = 0.5)

startSimulation(vcf, totalNumberOfIndividuals = 200)
saveSimulation("sim2")

loadSimulation("sim1")

sim1000G documentation built on June 10, 2019, 1:01 a.m.