plotRegionalGeneticMap: Generates a plot of the genetic map for a specified region.
In sim1000G: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Description
The plot shows the centimorgan vs base-pair positions.
The position of markers that have been read is also depicted as vertical lines
Usage
1
Arguments
bp
Vector of base-pair positions to generate a plot for
library("sim1000G")
examples_dir = system.file("examples", package = "sim1000G")
vcf_file = sprintf("
vcf = readVCF( vcf_file, maxNumberOfVariants = 100,
min_maf = 0.12)
# For realistic data use the function readGeneticMap
generateUniformGeneticMap()
pdf(file=tempfile())
plotRegionalGeneticMap(seq(1e6,100e6,by=1e6/2))
dev.off()
sim1000G documentation built on June 10, 2019, 1:01 a.m.
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Description
The plot shows the centimorgan vs base-pair positions. The position of markers that have been read is also depicted as vertical lines
Usage
1 |
Arguments
bp |
Vector of base-pair positions to generate a plot for library("sim1000G") examples_dir = system.file("examples", package = "sim1000G") vcf_file = sprintf(" vcf = readVCF( vcf_file, maxNumberOfVariants = 100, min_maf = 0.12) # For realistic data use the function readGeneticMap generateUniformGeneticMap() pdf(file=tempfile()) plotRegionalGeneticMap(seq(1e6,100e6,by=1e6/2)) dev.off() |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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