Description Usage Arguments Value
View source: R/stochastic_simulation.R
Calls the Julia function for simulating a stochastic system. Should not be used by itself (this function is called by the wrapper functions simulateInSilicoSystem and simulateParallelInSilicoSystem).
1 2 3 4 5 6 7 8 9 10 11 12 | callJuliaStochasticSimulation(
stochmodel,
QTLeffects,
InitAbundance,
genes,
simtime,
modelname = "MySimulation",
ntrials,
nepochs,
simalgorithm,
ev = getJuliaEvaluator()
)
|
stochmodel |
A Julia proxy object to retrieve the stochastic system in the Julia evaluator. |
QTLeffects |
The list of QTL effects coefficients of the in silico individual to be simulated (see |
InitAbundance |
The list of initial abundances of the molecules for the in silico individual to be simulated (see |
genes |
The data-frame of genes in the system. |
simtime |
Numeric. The amount of time to simulate the model (in seconds). |
modelname |
String. The name of the model. Default value "MySimulation". |
ntrials |
Integer. The number of times the simulation must be replicated. |
nepochs |
Integer. The number of times to record the state of the system during the simulation. |
simalgorithm |
String. The name of the simulation algorithm to use in the Julia function |
ev |
A Julia evaluator. If none provided select the current evaluator or create one if no evaluator exists. |
The result of the simulation (a data-frame).
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