steadyStateAbundance: Computes the steady state abundance of a molecule.

Description Usage Arguments Details Value

View source: R/in_silico_system.R

Description

Computes the steady state abundance of the active product of a gene/regulatory complex (in absence of any regulation).

Usage

1
steadyStateAbundance(id, genes, complexes, ploidy)

Arguments

id

the ID of the molecule.

genes

the data frame of genes in the in silico system.

complexes

the list of regulatory complexes and their composition.

ploidy

the ploidy of the system.

Details

If id represents a gene ID, returns the steady state abundance of its RNA (transcription rate/RNA decay rate) if it is a noncoding gene or the steady state abundance of its protein (RNA steady state * translation rate/protein decay rate) if it is a protein-coding gene. If id represents a regulatory complex, returns the minimum of the steady state abundance of its components (recursively if the regulatory complex is composed of other regulatory complexes).

Value

The steady state abundance of the active product of the gene/regulatory complex.


sismonr documentation built on Feb. 11, 2020, 9:07 a.m.