Description Usage Arguments Value Examples
View source: R/in_silico_system.R
Adds a regulatory complex in the in silico system with specified parameters (if provided), or with parameters sampled according to the system parameters.
1 2 3 4 5 6 | addComplex(
insilicosystem,
compo,
formationrate = NULL,
dissociationrate = NULL
)
|
insilicosystem |
The in silico system (see |
compo |
An character vector, each element corresponding to the ID of the genes or regulatory complexes composing the complex. All genes/complexes composing the complex must
have the same biological function (i.e. same |
formationrate |
The formation rate of the complex. If none provided, randomly chosen according to the
parameter |
dissociationrate |
The dissociation rate of the complex. If none provided, randomly chosen according to the
parameter |
Returns the modified in silico system.
1 2 3 4 | mysystem = createInSilicoSystem(G = 10, PC.p = 1, PC.TC.p = 1)
mysystem$complexes ## list of complexes existing in the system
mysystem2 = addComplex(mysystem, c(1, 2, 3))
mysystem2$complexes
|
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