mergeComplexesAbundance: Merge the free and in-complex versions of molecules.

In sismonr: Simulation of in Silico Multi-Omic Networks

Description

Merge (i.e. sum) the abundance of the free and in-complex versions of each molecule in the results of a simulation.

Usage

mergeComplexesAbundance(df)

Arguments

df	A dataframe with the abundance of the different molecules over time (from simulateInSilicoSystem or simulateParallelInSilicoSystem).

Value

A dataframe in which the abundance of free and in complex versions of a molecule have been merged to give the abundance of the molecule (without distinction of whether or not it is bound in a molecular complex).

Examples

mysystem = createInSilicoSystem(G = 5, PC.p = 1, PC.TC.p = 1, ploidy = 1)
mysystem = addComplex(mysystem, c(1, 2))
mypop = createInSilicoPopulation(1, mysystem)
sim = simulateInSilicoSystem(mysystem, mypop, 100)
head(sim$Simulation)
mergedComplex = mergeComplexesAbundance(sim$Simulation)
head(mergedComplex)

sismonr documentation built on Feb. 11, 2020, 9:07 a.m.