Global functions | |
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.actual_scan_indices | Source code |
.actual_snp_indices | Source code |
.chisq_pvalues | Source code |
.convert_snpgdsLDMat_output | Source code |
.create_gds | Source code |
.format_eng_range | Source code |
.gds_read_index | Source code |
.gds_serialize_object | Source code |
.gds_unserialize_object | Source code |
.ggplot_ld_diamonds | Source code |
.ggplot_ld_points | Source code |
.is_block | Source code |
.rbind_qc | Source code |
.split_sorted_ints_by_blocks | Source code |
actg_to_numeric | Source code |
actg_tsv_to_gdata | Source code |
biomart_gene_annots | Source code |
build_gwastools | Source code |
chisq_pvalues | Man page Source code |
chisq_pvalues_gdata | Man page Source code |
crohn | Man page |
diamond_annots | Man page Source code |
diamond_bounds | Source code |
diamond_grid | Source code |
extdata_filepath | Source code |
fetch_allele1 | Source code |
fetch_allele1.GdsGenotypeReader | Man page Source code |
fetch_allele1.GenotypeData | Man page Source code |
fetch_allele1.GenotypeDataSubset | Man page Source code |
fetch_allele1.default | Man page Source code |
fetch_allele2 | Source code |
fetch_allele2.GdsGenotypeReader | Man page Source code |
fetch_allele2.GenotypeData | Man page Source code |
fetch_allele2.GenotypeDataSubset | Man page Source code |
fetch_allele2.default | Man page Source code |
fetch_gds | Source code |
fetch_gds.GdsGenotypeReader | Man page Source code |
fetch_gds.GenotypeData | Man page Source code |
fetch_gds.GenotypeDataSubset | Man page Source code |
fetch_gds.default | Man page Source code |
fetch_genotypes | Source code |
fetch_genotypes_by_blocks | Source code |
fetch_genotypes_by_chunk_iterator | Source code |
fetch_genotypes_by_idx | Source code |
fetch_snpgds_alleles | Source code |
gdata_add_gene_annots | Man page Source code |
gdata_add_gene_annots_aim_example | Man page Source code |
gdata_add_gene_annots_hladr_example | Man page Source code |
gdata_scans_annots | Man page Source code |
gdata_snps_annots | Man page Source code |
gds_genotype_reader | Source code |
genotype_data_subset | Source code |
get_biomart_metadb | Man page Source code |
get_scan_annot | Source code |
get_scan_annot.GenotypeData | Man page Source code |
get_scan_annot.GenotypeDataSubset | Man page Source code |
get_snp_annot | Source code |
get_snp_annot.GenotypeData | Man page Source code |
get_snp_annot.GenotypeDataSubset | Man page Source code |
ggplot_associations | Man page Source code |
ggplot_ld | Man page Source code |
ggplot_snp_pos | Man page Source code |
gtable_ld | Man page Source code |
gtable_ld_associations | Man page Source code |
gtable_ld_associations_combine | Man page Source code |
gtable_ld_associations_gdata | Man page Source code |
gtable_ld_gdata | Man page Source code |
gtable_ld_grobs | Man page Source code |
hgdp_filepaths | Source code |
ids_subset | Source code |
is_snp_first_dim | Source code |
is_snp_first_dim.GdsGenotypeReader | Man page Source code |
is_snp_first_dim.GenotypeData | Man page Source code |
is_snp_first_dim.MatrixGenotypeReader | Man page Source code |
is_snp_first_dim.NcdfGenotypeReader | Man page Source code |
is_snp_first_dim.default | Man page Source code |
is_snp_first_dim.gds.class | Man page Source code |
load_gds_as_genotype_data | Man page Source code |
parallel_apply | Man page Source code |
print_qc_as_tex_table | Man page Source code |
read_snp_gds_alleles | Source code |
request_snpgds_file | Source code |
require_defaults | Source code |
save_genotype_data_as_gds | Source code |
save_hgdp_as_gds | Man page Source code |
select_region_idxs | Man page Source code |
setup_temp_dir | Source code |
snp_gds_open | Source code |
snp_position_colors | Source code |
snplinkage | Man page |
snplinkage-package | Man page |
snprelate_allele_frequencies | Man page Source code |
snprelate_ld | Man page Source code |
snprelate_ld_select | Man page Source code |
snprelate_qc | Man page Source code |
txt_scans_to_df | Source code |
txt_snps_to_df | Source code |
unzip_hgdp | Source code |
write_genotypes_to_gds | Source code |
write_snp_gds | Source code |
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