Man pages for snplinkage
Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations
| chisq_pvalues | Compute Chi-squared p-values |
| chisq_pvalues_gdata | Compute Chi-squared p-values on a Genotype data object |
| compound | Assignment pipe |
| diamond_annots | Get diamond ggplot layer. |
| exposition | Exposition pipe |
| gdata_add_gene_annots | gdata_add_gene_annots |
| gdata_add_gene_annots_aim_example | gdata_add_gene_annots_aim_example |
| gdata_add_gene_annots_hladr_example | gdata_add_gene_annots_hladr_example |
| gdata_scans_annots | gdata_scan_annots |
| gdata_snps_annots | gdata_snp_annots |
| get_biomart_metadb | get_biomart_metadb |
| ggplot_associations | Ggplot associations |
| ggplot_ld | Ggplot linkage disequilibrium |
| ggplot_snp_pos | Ggplot SNPs position |
| gtable_ld | Gtable of linkage disequilibrium and chromosomic positions |
| gtable_ld_associations | Gtable of linkage disequilibrium and associations |
| gtable_ld_associations_gdata | Gtable of linkage disequilibrium and associations using a... |
| gtable_ld_gdata | Gtable of linkage disequilibrium and positions using a... |
| load_gds_as_genotype_data | Load GDS as Genotype Data |
| parallel_apply | Separate a matrix in a list of matrices of length the number... |
| pipe | Pipe |
| print_qc_as_tex_table | print_qc_as_tex_table |
| save_hgdp_as_gds | save_hgdp_as_gds |
| select_region_idxs | select_region_idxs |
| snplinkage-package | snplinkage: Single Nucleotide Polymorphisms Linkage... |
| snprelate_allele_frequencies | Compute allele frequencie and snp missing rate |
| snprelate_ld | Wrapper for snpgdsLDMat to compute r2 |
| snprelate_ld_select | Wrapper for snpgdsLDpruning to select Tag SNPs |
| snprelate_qc | snprelate_qc |
