load_gds_as_genotype_data: Load GDS as Genotype Data

In snplinkage: Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations

Load GDS as Genotype Data

Description

Open a connection to a snpgds file (cf. SNPRelate package) as a Genotype Data object.

Usage

load_gds_as_genotype_data(
  gds_file,
  read_snp_annot = TRUE,
  read_scan_annot = TRUE
)

Arguments

gds_file	Path of snpgds file
read_snp_annot	Read the SNPs' annotations
read_scan_annot	Read the scans' annotations

Value

Genotype Data object

Examples

library(snplinkage)
gds_path <- save_hgdp_as_gds()
gdata <- load_gds_as_genotype_data(gds_path)

snplinkage documentation built on Sept. 11, 2024, 6:02 p.m.