chisq_pvalues: Compute Chi-squared p-values

In snplinkage: Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations

Compute Chi-squared p-values

Description

Compute Chi-squared p-values

Usage

chisq_pvalues(
  m_data,
  response,
  adjust_method = "fdr",
  mlog10_transform = TRUE,
  n_cores = 1,
  ...
)

Arguments

m_data	Data matrix of observations by variables
response	Response vector of length the number of observations
adjust_method	Multiple testing p-value adjustment method. Passed to stats::p.adjust. 'fdr' by default.
mlog10_transform	Logical, transform p-values by minus log10. True by default.
n_cores	Number of cores
...	Passed to stats::chisq.test

Value

Chi-squared p-values

snplinkage documentation built on May 4, 2023, 9:09 a.m.