gdata_add_gene_annots: gdata_add_gene_annots

In snplinkage: Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations

gdata_add_gene_annots

Description

Add biomaRt gene annotations to Genotype Data object.

Usage

gdata_add_gene_annots(
  gdata,
  snp_idxs,
  rsids_colname = "probe_id",
  biomart_metadb = get_biomart_metadb()
)

Arguments

gdata	Genotype Data object
snp_idxs	SNP indexes
rsids_colname	Column of SNP annotation data frame with rs identifiers
biomart_metadb	List with slots snpmart and ensembl, corresponding to the biomart databases to query for SNP identifiers and gene names, respectively. See get_biomart_metadb function.

Value

Genotype Data object

snplinkage documentation built on May 4, 2023, 9:09 a.m.