API for snplinkage
Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations
| Global functions | |
|---|---|
| %$% | Man page |
| %<>% | Man page |
| %>% | Man page |
| .actual_scan_indices | Source code |
| .actual_snp_indices | Source code |
| .chisq_pvalues | Source code |
| .convert_snpgdsLDMat_output | Source code |
| .create_gds | Source code |
| .format_eng_range | Source code |
| .gds_read_index | Source code |
| .gds_serialize_object | Source code |
| .gds_unserialize_object | Source code |
| .ggplot_ld_diamonds | Source code |
| .ggplot_ld_points | Source code |
| .is_block | Source code |
| .rbind_qc | Source code |
| .split_sorted_ints_by_blocks | Source code |
| actg_to_numeric | Source code |
| actg_tsv_to_gdata | Source code |
| biomart_gene_annots | Source code |
| build_gwastools | Source code |
| chisq_pvalues | Man page Source code |
| chisq_pvalues_gdata | Man page Source code |
| diamond_annots | Man page Source code |
| diamond_bounds | Source code |
| diamond_grid | Source code |
| extdata_filepath | Source code |
| fetch_allele1 | Source code |
| fetch_allele1.GdsGenotypeReader | Source code |
| fetch_allele1.GenotypeData | Source code |
| fetch_allele1.GenotypeDataSubset | Source code |
| fetch_allele1.default | Source code |
| fetch_allele2 | Source code |
| fetch_allele2.GdsGenotypeReader | Source code |
| fetch_allele2.GenotypeData | Source code |
| fetch_allele2.GenotypeDataSubset | Source code |
| fetch_allele2.default | Source code |
| fetch_gds | Source code |
| fetch_gds.GdsGenotypeReader | Source code |
| fetch_gds.GenotypeData | Source code |
| fetch_gds.GenotypeDataSubset | Source code |
| fetch_gds.default | Source code |
| fetch_genotypes | Source code |
| fetch_genotypes_by_blocks | Source code |
| fetch_genotypes_by_chunk_iterator | Source code |
| fetch_genotypes_by_idx | Source code |
| fetch_snpgds_alleles | Source code |
| gdata_add_gene_annots | Man page Source code |
| gdata_add_gene_annots_aim_example | Man page Source code |
| gdata_add_gene_annots_hladr_example | Man page Source code |
| gdata_scans_annots | Man page Source code |
| gdata_snps_annots | Man page Source code |
| gds_genotype_reader | Source code |
| genotype_data_subset | Source code |
| get_biomart_metadb | Man page Source code |
| get_scan_annot | Source code |
| get_scan_annot.GenotypeData | Source code |
| get_scan_annot.GenotypeDataSubset | Source code |
| get_snp_annot | Source code |
| get_snp_annot.GenotypeData | Source code |
| get_snp_annot.GenotypeDataSubset | Source code |
| ggplot_associations | Man page Source code |
| ggplot_ld | Man page Source code |
| ggplot_snp_pos | Man page Source code |
| gtable_ld | Man page Source code |
| gtable_ld_associations | Man page Source code |
| gtable_ld_associations_combine | Source code |
| gtable_ld_associations_gdata | Man page Source code |
| gtable_ld_gdata | Man page Source code |
| gtable_ld_grobs | Source code |
| hgdp_filepaths | Source code |
| ids_subset | Source code |
| is_snp_first_dim | Source code |
| is_snp_first_dim.GdsGenotypeReader | Source code |
| is_snp_first_dim.GenotypeData | Source code |
| is_snp_first_dim.MatrixGenotypeReader | Source code |
| is_snp_first_dim.NcdfGenotypeReader | Source code |
| is_snp_first_dim.default | Source code |
| is_snp_first_dim.gds.class | Source code |
| load_gds_as_genotype_data | Man page Source code |
| parallel_apply | Man page Source code |
| print_qc_as_tex_table | Man page Source code |
| read_snp_gds_alleles | Source code |
| request_snpgds_file | Source code |
| require_defaults | Source code |
| save_genotype_data_as_gds | Source code |
| save_hgdp_as_gds | Man page Source code |
| select_region_idxs | Man page Source code |
| setup_temp_dir | Source code |
| snp_gds_open | Source code |
| snp_position_colors | Source code |
| snplinkage | Man page |
| snplinkage-package | Man page |
| snprelate_allele_frequencies | Man page Source code |
| snprelate_ld | Man page Source code |
| snprelate_ld_select | Man page Source code |
| snprelate_qc | Man page Source code |
| txt_scans_to_df | Source code |
| txt_snps_to_df | Source code |
| unzip_hgdp | Source code |
| write_genotypes_to_gds | Source code |
| write_snp_gds | Source code |
