Files in snplinkage

Single Nucleotide Polymorphisms Linkage Disequilibrium Visualizations

NEWS.md R/0_imports.R R/fetch_hgdp.R R/associations.R R/ggplots_ld.R R/snplinkage-package.R R/snprelate_ld.R R/geno_data_fetch.R R/geno_data_convert.R R/2_all_generics.R R/gtable_associations.R R/gtable_ld.R R/5_methods_genotype_data_subset.R R/1_allclasses.R R/biomart_annots.R R/4_methods.R R/utils.R R/snprelate_qc.R inst/doc/snplinkage.pdf inst/doc/snplinkage.R inst/doc/customize.Rmd inst/doc/customize.R inst/script/fetch_and_reduce_hgdp.R tests/testthat.R tests/testthat/test-geno_data.R tests/testthat/test-snprelate_ld.R tests/testthat/test-vignette.R tests/testthat/test-ggplots_ld.R vignettes/customize.Rmd man/snprelate_allele_frequencies.Rd man/fetch_allele1.GenotypeDataSubset.Rd man/fetch_allele2.GenotypeDataSubset.Rd man/is_snp_first_dim.default.Rd man/gtable_ld_associations_gdata.Rd man/fetch_gds.GenotypeData.Rd man/ggplot_snp_pos.Rd man/fetch_allele1.default.Rd man/get_biomart_metadb.Rd man/gdata_scans_annots.Rd man/gtable_ld_gdata.Rd man/gdata_add_gene_annots_aim_example.Rd man/is_snp_first_dim.GdsGenotypeReader.Rd man/snplinkage-package.Rd man/fetch_allele2.default.Rd man/parallel_apply.Rd man/get_snp_annot.GenotypeData.Rd man/gtable_ld_associations.Rd man/ggplot_associations.Rd man/fetch_allele2.GenotypeData.Rd man/fetch_allele1.GdsGenotypeReader.Rd man/is_snp_first_dim.MatrixGenotypeReader.Rd man/select_region_idxs.Rd man/crohn.Rd man/diamond_annots.Rd man/get_snp_annot.GenotypeDataSubset.Rd man/gdata_add_gene_annots.Rd man/snprelate_ld_select.Rd man/save_hgdp_as_gds.Rd man/gtable_ld_associations_combine.Rd man/fetch_gds.GdsGenotypeReader.Rd man/chisq_pvalues.Rd man/gtable_ld_grobs.Rd man/get_scan_annot.GenotypeDataSubset.Rd man/is_snp_first_dim.NcdfGenotypeReader.Rd man/exposition.Rd man/snprelate_ld.Rd man/get_scan_annot.GenotypeData.Rd man/print_qc_as_tex_table.Rd man/is_snp_first_dim.gds.class.Rd man/gtable_ld.Rd man/is_snp_first_dim.GenotypeData.Rd man/gdata_add_gene_annots_hladr_example.Rd man/pipe.Rd man/compound.Rd man/fetch_allele2.GdsGenotypeReader.Rd man/fetch_gds.default.Rd man/fetch_gds.GenotypeDataSubset.Rd man/fetch_allele1.GenotypeData.Rd man/chisq_pvalues_gdata.Rd man/load_gds_as_genotype_data.Rd man/gdata_snps_annots.Rd man/snprelate_qc.Rd man/ggplot_ld.Rd