| abs_blcor | Baseline correction for absorbance data |
| abs_fit_slope | Fit absorbance data to exponential curve. 'drm' is used for... |
| absorbance_read | Reading absorbance data from txt and csv files. |
| abs_parms | Calculating slopes and slope ratios of a data frame of... |
| A_missing | Calculate the sample loadings for samples not involved in... |
| as.data.frame.eem | Converting EEM data from class eem to data.frame. |
| dot-eem_csv | Import EEMs from generic csv files. |
| dot-trans_parafac | Add data of a PARAFAC model derived from multiway from EEMs |
| eem2array | Data from an eemlist is transformed into an array |
| eem_absdil | Multiply absorbance data according to the dilution and remove... |
| eem_apply | Applying functions on EEMs |
| eem_checkdata | Check your EEM, absorption and metadata before processing |
| eem_checksize | Check size of EEMs |
| eem_corrections | Return names of samples where certain corrections are... |
| eem_csv | Importer function for generic csv files to be used with... |
| eem_csv2 | Importer function for generic csv files to be used with... |
| eem_dilcorr | Create table how samples should be corrected because of... |
| eem_dilution | Modifying fluorescence data according to dilution. |
| eem_duplicates | Check for duplicate sample names |
| eem_easy | Opens an R markdown template for an easy and userfriendly... |
| eem_eemdil | Correct names of EEM samples to match undiluted absorbance... |
| eem_exclude | Exclude complete wavelengths or samples form data set |
| eem_export | Export all samples of an eem_list |
| eem_extend2largest | EEM sample data is extended to include all wavelengths in all... |
| eem_getextreme | Determines the the biggest range of EEM spectrum where data... |
| eem_hitachi | Importer function for Hitachi F-7000 txt files to be used... |
| eem_ife_correction | Wrapper function to allow eem_inner_filter_effect (eemR)... |
| eem_import_dir | Load all eemlist obects saved in different Rdata or RDa files... |
| eem_interp | Missing values are interpolated within EEM data |
| eem_is.na | Check for NAs in EEM data |
| eem_list | 15 fluorescence samples from drEEM used for examples. |
| eem_list_outliers | 2 fluorescence samples from drEEM that were excluded as... |
| eem_load_dreem | Load original data from the drEEM tutorial and return it as... |
| eem_matmult | Multiply all EEMs with a matrix |
| eem_metatemplate | Create table that contains sample names and locations of... |
| eem_name_replace | Replace matched patterns in sample names |
| eem_overview_plot | Plot fluorescence data from several samples split into... |
| eem_parafac | Runs a PARAFAC analysis on EEM data |
| eempf4analysis | Create table of PARAFAC components and (optionally) EEM peaks... |
| eempf_bindxc | Combining extracted components of PARAFAC models |
| eempf_compare | Plot a set of PARAFAC models to compare the single components |
| eempf_comp_load_plot | Plot components from a PARAFAC model |
| eempf_comp_mat | Extract EEM matrix for single components determined in the... |
| eempf_comp_names | Extract names from PARAFAC model components |
| eempf_comp_names-set | Set names of PARAFAC components |
| eempf_comps3D | 3D plots of PARAFAC components |
| eempf_convergence | Extract modelling information from a PARAFAC model. |
| eempf_corcondia | Calculate the core consistancy of an EEM PARAFAC model |
| eempf_corplot | Plot correlations of components in samples |
| eempf_cortable | Calculating correlations between the component loadings in... |
| eempf_eemqual | Calculating EEMqual which is an indicator of a PARAFAC... |
| eempf_excomp | Extracting components of a PARAFAC model |
| eempf_export | Create one table containing the PARAFAC models factors and... |
| eempf_fits | Fits vs. components of PARAFAC models are plotted |
| eempf_leverage | Calculate the leverage of each emission and excitation... |
| eempf_leverage_data | Combine leverages into one data frame and add optional... |
| eempf_leverage_ident | Plot leverage of emission wavelengths, excitation wavelengths... |
| eempf_leverage_plot | Plot leverage of emission wavelengths, excitation wavelengths... |
| eempf_load_plot | Plot amount of each component in each sample as bar plot |
| eempf_mleverage | Calculate the leverage of each emission and excitation... |
| eempf_OF_upload | Upload PARAFAC models to openfluor.org |
| eempf_openfluor | Write out PARAFAC components to submit to openfluor.org. |
| eempf_plot_comps | Plot all components of PARAFAC models |
| eempf_plot_ssccheck | Plot results from an SSC check |
| eempf_reorder | Reorder PARAFAC components |
| eempf_report | Create a html report of a PARAFAC analysis |
| eempf_rescaleBC | Rescale B and C modes of PARAFAC model |
| eempf_residuals | Calculate residuals of EEM data according to a certain model |
| eempf_residuals_metrics | Calculate residual metrics from a PARAFAC model |
| eempf_residuals_plot | Plot samples by means of whole sample, each single component... |
| eempf_ssc | Calculate the shift-and shape-sensitive congruence (SSC)... |
| eempf_ssccheck | Check SSCs between different models or initialisations of one... |
| eempf_varimp | Calculate the importance of each component. |
| eem_raman_area | Calculate raman area of EEM samples |
| eem_raman_normalisation2 | Wrapper function to eem_raman_normalisation (eemR). |
| eem_range | Cut EEM data matching a given wavelength range |
| eem_read_csv | Import EEMs from generic csv tables (deprecated) |
| eem_red2smallest | Remove wavelengths, that are missing in at least one sample... |
| eem_rem_scat | Remove Raman and Rayleigh scattering in fluorescence data |
| eem_scale_ext | Determine the range of fluorescence values in a set of... |
| eem_setNA | set parts of specific samples to NA and optionally... |
| eem_smooth | Smooth fluorescence data by calculating rolling mean along... |
| eem_spectral_cor | Multiply EEMs with spectral correction vectors (Emission and... |
| eem_write_csv | Export samples in an EEM list to a single csv files |
| geom_eempeakloc | Mark common EEM peaks |
| geom_eemregions | Mark common reagions to EEMs to show molecular groups |
| geom_eemscatter | Mark EEM scatter bands |
| ggeem | EEM spectra plotted with ggplot2 |
| ggeem_overlay | Add layers of scatter bands, molecular regions and common... |
| list_join | Full join of a list of data frames. |
| maxlines | Extract data from emission and excitation wavelengths of the... |
| norm2A | Compensate for normalisation in C-modes |
| norm_array | Normalise 3-dimensional array in first and second dimension |
| parafac_conv | Calculate a PARAFAC model similar to and using 'parafac'. |
| peaks | data.frame containing common EEM peaks with the wavelengths... |
| pf1 | PARAFAC model, see vignette, unconstrained |
| pf1n | PARAFAC model, see vignette, non-negative constraints |
| pf2 | PARAFAC model, see vignette, non-negative constraints,... |
| pf3 | PARAFAC model, see vignette, non-negative constraints,... |
| pf4 | PARAFAC model, see vignette, non-negative constraints,... |
| sh | result from PARAFAC split-half analysis, periodic data split |
| splithalf | Running a Split-Half analysis on a PARAFAC model |
| splithalf_plot | Plot results from a splithalf analysis |
| splithalf_splits | Extracting a list of sample names in each subsample from a... |
| splithalf_tcc | Extracting TCC values from a splithalf analysis |
| ssc | Calculate the shift-and shape-sensitive congruence (SSC)... |
| ssc_max | Calculate the combination of components giving the maximum of... |
| tcc | Caluclate Tucker's Congruence Coefficient of PARAFAC... |
| tcc_find_pairs | Reorders components of different PARAFAC models according to... |
