compute.combat: Initiate ComBat adjustment

In survJamda: Survival Prediction by Joint Analysis of Microarray Gene Expression Data

Description

Call ComBat function for ComBat-adjustment of microarray gene expression data.

Usage

compute.combat(fileGeno, fileSample)

Arguments

fileGeno	A character string specifying the name of the gene expression file. Genes are in columns and samples are in rows. Column names should contain the gene names.
fileSample	A character string specifying the name of the file containing the sample or array names of gene expression data and batch ID.

Value

ComBat-adjusted gene expression data matrix. Genes are organized in rows and samples are organized in columns.

Warning

This function is not called by the user directly.

Author(s)

Haleh Yasrebi

survJamda documentation built on May 1, 2019, 8:50 p.m.