int.eprior: Integration function to find nonparametric adjustments

In survJamda: Survival Prediction by Joint Analysis of Microarray Gene Expression Data

Description

Monte Carlo integration function to find the nonparametric adjustments

Usage

int.eprior(sdat, g.hat, d.hat)

Arguments

sdat	Matrix of standardized gene expression data.
g.hat	Estimated additive batch effect.
d.hat	Estimated multiplicative batch effect.

Value

Matrix with two columns containing the estimated additive and multiplicative batch effects.

Warning

This function is not called by the user directly.

Author(s)

WE Johnson

References

W. Johnson E., L. Chen, Rabinovic, and A. Adjusting batch effects in microarray expression data using Empirical Bayes methods. Biostatistics, 8(1):118-127, January2007. ISSN 1465-4644. doi: http://dx.doi.org/10.1093/biostatistics/kxj037.

See Also

ComBat

survJamda documentation built on May 1, 2019, 8:50 p.m.