tests/testthat/test_single_effect_regression_rss.R

In susieR: Sum of Single Effects Linear Regression

context("test_single_effect_regression_rss.R")

test_that("single_effect_regression_rss (lambda = 0) agrees with previous version", with(simulate(200, 500), {
  original.res = readRDS('singleReg_rss_lambda0_res.rds')$s
  # the git commit id to previous result is readRDS('singleReg_rss_res.rds')$git_commit_id

  ss = univariate_regression(X, y)
  R = cor(X)
  z = ss$betahat/ss$sebetahat
  R = set_R_attributes(R, 1e-08)
  attr(R, 'lambda') = 0
  Sigma = update_Sigma(R, s$sigma2, z)

  s = single_effect_regression_rss(z, Sigma, optimize_V = "none")

  expect_equal(attr(R, 'd'), rep(1, 500), tolerance=1e-4)
  expect_equal_SER_suff_stat(s, original.res, tolerance=1e-4)
}))

test_that("single_effect_regression_rss (lambda = 1) agrees with previous version", with(simulate(200, 500), {
  original.res = readRDS('singleReg_rss_lambda1_res.rds')$s
  # the git commit id to previous result is readRDS('singleReg_rss_res.rds')$git_commit_id

  ss = univariate_regression(X, y)
  R = cor(X)
  z = ss$betahat/ss$sebetahat
  R = set_R_attributes(R, 1e-08)
  attr(R, 'lambda') = 1
  Sigma = update_Sigma(R, s$sigma2, z)

  s = single_effect_regression_rss(z, Sigma, optimize_V = "none")

  expect_equal(attr(R, 'd'), rep(1, 500), tolerance=1e-4)
  expect_equal_SER_suff_stat(s, original.res, tolerance=1e-4)
}))