fluxDistribution-class: Class '"fluxDistribution"'

In sybil: Efficient Constrained Based Modelling

Description

Structure of the class "fluxDistribution". Objects of that class are used by class "optsol" in order to store flux distributions. Flux distributions are stored column by column; each flux corresponds to one row and the optimizations correspond to the columns.

Objects from the Class

Objects can be created by calls of the form test <- fluxDistribution(fluxes, nrow = 1, ncol = 1.

If argument fluxes is of class Matrix or matrix, num_of_fluxes is set to ncol(fluxes) * nrow(fluxes). If argument fluxes is a vector, a matrix will be generated according to nrow and ncol.

Slots

fluxes:

Object of class "Matrix" containing fluxdistributions column by column.

num_of_fluxes:

Object of class "integer" containing the number of elements in fluxes.

Methods

[

signature(x = "fluxDistribution"): subsetting operator for the matrix of flux distributions.

fluxes

signature(object = "fluxDistribution"): gets the fluxes slot.

fluxes<-

signature(object = "fluxDistribution"): sets the fluxes slot.

num_of_fluxes

signature(object = "fluxDistribution"): gets the num_of_fluxes slot.

nnzero

signature(object = "fluxDistribution"): gets the number of non-zero elements in slot fluxes.

nvar

signature(object = "fluxDistribution"): gets the number of fluxes in the fluxdistribution in slot fluxes (the number of rows of slot fluxes).

plot

signature(x = "fluxDistribution", y = "missing"): heatmap like plotting method for fluxdistributions. Not finished yet.

Author(s)

Gabriel Gelius-Dietrich <[e-mail]>

Maintainer: Mayo Roettger <[e-mail]>

Examples

  showClass("fluxDistribution")

sybil documentation built on May 31, 2021, 5:08 p.m.