API for sybil
Efficient Constrained Based Modelling

Global functions
.bracket_pairs Source code
.ceilValues Source code
.checkEmptyField Source code
.check_brackets Source code
.createReactionString Source code
.deadEndMetabolite Source code
.doInRound Source code
.floorValues Source code
.generateFluxdels Source code
.generateModKey Source code
.generateWT Source code
.makeLPcompatible Source code
.onLoad Source code
.parseBoolean Source code
.ppProcessing Source code
.prepareSubSysMatrix Source code
.printLogComment Source code
.printNamedList Source code
.progressDots Source code
.reassignFwBwMatch Source code
.recodeMatrix Source code
.singletonMetabolite Source code
.validmodelorg Source code
.validoptsol Source code
.validreact Source code
.validreactId Source code
.validreactId_Exch Source code
.validsysBiolAlg Source code
ALGORITHM Man page
EasyConstraint Man page
Ec_core Man page
MAXIMUM Man page
METHOD Man page
OPT_DIRECTION Man page
PATH_TO_MODEL Man page
S Man page
S,modelorg-method Man page
S<- Man page
S<-,modelorg-method Man page
SOLVER Man page
SOLVER_CTRL_PARM Man page
SYBIL_SETTINGS Man page Source code
Snnz Man page
Snnz,modelorg-method Man page
TOLERANCE Man page
USE_NAMES Man page
[,fluxDistribution,ANY,ANY,ANY-method Man page
[,optsol_fluxdel,ANY,ANY,ANY-method Man page
[,reactId,ANY,ANY,ANY-method Man page
[,reactId_Exch,ANY,ANY,ANY-method Man page
addAlgorithm Man page Source code
addCols Man page
addCols,optObj_clpAPI,numeric-method Man page
addCols,optObj_cplexAPI,numeric-method Man page
addCols,optObj_glpkAPI,numeric-method Man page
addCols,optObj_lpSolveAPI,numeric-method Man page
addCols-methods Man page
addColsToProb Man page
addColsToProb,optObj_clpAPI-method Man page
addColsToProb,optObj_cplexAPI-method Man page
addColsToProb,optObj_glpkAPI-method Man page
addColsToProb,optObj_lpSolveAPI-method Man page
addColsToProb-methods Man page
addExchReact Man page Source code
addReact Man page
addReact,modelorg,ANY-method Man page
addReact,modelorg-method Man page
addRows Man page
addRows,optObj_clpAPI,numeric-method Man page
addRows,optObj_cplexAPI,numeric-method Man page
addRows,optObj_glpkAPI,numeric-method Man page
addRows,optObj_lpSolveAPI,numeric-method Man page
addRows-methods Man page
addRowsCols Man page
addRowsCols,optObj_clpAPI,numeric,numeric-method Man page
addRowsCols,optObj_cplexAPI,numeric,numeric-method Man page
addRowsCols,optObj_glpkAPI,numeric,numeric-method Man page
addRowsCols,optObj_lpSolveAPI,numeric,numeric-method Man page
addRowsCols-methods Man page
addRowsToProb Man page
addRowsToProb,optObj_clpAPI-method Man page
addRowsToProb,optObj_cplexAPI-method Man page
addRowsToProb,optObj_glpkAPI-method Man page
addRowsToProb,optObj_lpSolveAPI-method Man page
addRowsToProb-methods Man page
addSolver Man page Source code
alg_par Man page
alg_par,optsol-method Man page
alg_par,sysBiolAlg-method Man page
alg_par<- Man page
alg_par<-,optsol-method Man page
alg_par<-,sysBiolAlg-method Man page
algorithm Man page
algorithm,optsol-method Man page
algorithm,sysBiolAlg-method Man page
algorithm<- Man page
algorithm<-,optsol-method Man page
algorithm<-,sysBiolAlg-method Man page
allGenes Man page
allGenes,modelorg-method Man page
allGenes<- Man page
allGenes<-,modelorg-method Man page
applyChanges Man page
applyChanges,sysBiolAlg-method Man page
applyChanges,sysBiolAlg_room-method Man page
applyChanges-methods Man page
backupProb Man page
backupProb,optObj_clpAPI-method Man page
backupProb,optObj_cplexAPI-method Man page
backupProb,optObj_glpkAPI-method Man page
backupProb,optObj_lpSolveAPI-method Man page
backupProb-methods Man page
blReact Man page
blReact,optsol_fluxVar-method Man page
blocked Man page
blocked,optsol_blockedReact-method Man page
blocked<- Man page
blocked<-,optsol_blockedReact-method Man page
blockedReact Man page Source code
changeBounds Man page Source code
changeColsBnds Man page
changeColsBnds,optObj_clpAPI-method Man page
changeColsBnds,optObj_cplexAPI-method Man page
changeColsBnds,optObj_glpkAPI-method Man page
changeColsBnds,optObj_lpSolveAPI-method Man page
changeColsBnds-methods Man page
changeColsBndsObjCoefs Man page
changeColsBndsObjCoefs,optObj_clpAPI-method Man page
changeColsBndsObjCoefs,optObj_cplexAPI-method Man page
changeColsBndsObjCoefs,optObj_glpkAPI-method Man page
changeColsBndsObjCoefs,optObj_lpSolveAPI-method Man page
changeColsBndsObjCoefs-methods Man page
changeGPR Man page Source code
changeMatrixRow Man page
changeMatrixRow,optObj_cplexAPI-method Man page
changeMatrixRow,optObj_glpkAPI-method Man page
changeMatrixRow,optObj_lpSolveAPI-method Man page
changeMatrixRow-methods Man page
changeMaxObj Man page
changeMaxObj,sysBiolAlg_mtf-method Man page
changeObjCoefs Man page
changeObjCoefs,optObj_clpAPI-method Man page
changeObjCoefs,optObj_cplexAPI-method Man page
changeObjCoefs,optObj_glpkAPI-method Man page
changeObjCoefs,optObj_lpSolveAPI-method Man page
changeObjCoefs-methods Man page
changeObjFunc Man page Source code
changeRowsBnds Man page
changeRowsBnds,optObj_clpAPI-method Man page
changeRowsBnds,optObj_cplexAPI-method Man page
changeRowsBnds,optObj_glpkAPI-method Man page
changeRowsBnds,optObj_lpSolveAPI-method Man page
changeRowsBnds-methods Man page
changeUptake Man page
changeUptake,modelorg-method Man page
changeUptake-methods Man page
checkAlgorithm Man page Source code
checkDefaultMethod Man page Source code
checkOptSol Man page
checkOptSol,optsol-method Man page
checkOptSol-methods Man page
checkReactId Man page Source code
checkSolStat Man page Source code
checkStat Man page
checkStat,optsol-method Man page
checkVersion Man page
checkVersion,modelorg Man page
checkVersion,modelorg-method Man page
checkVersion-methods Man page
checksol Man page Source code
checksol-class Man page
chlb Man page
chlb,optsol_fluxdel-method Man page
chlb<- Man page
chlb<-,optsol_fluxdel-method Man page
chub Man page
chub,optsol_fluxdel-method Man page
chub<- Man page
chub<-,optsol_fluxdel-method Man page
clpPtr-class Man page
cmd Man page
cmd,ppProc-method Man page
cmd<- Man page
cmd<-,ppProc-method Man page
comp_attr Man page Man page
comp_attr,modelorg-method Man page
comp_attr,react-method Man page
comp_attr<- Man page Man page
comp_attr<-,modelorg-method Man page
comp_attr<-,react-method Man page
cplexPointer-class Man page
cplexPtr-class Man page
cpsol Man page
cpsol,optsol_genedel-method Man page
ctrlfl Man page
ctrlfl,optsol_phpp-method Man page
ctrlfl,optsol_robAna-method Man page
ctrlfl<- Man page
ctrlfl<-,optsol_phpp-method Man page
ctrlfl<-,optsol_robAna-method Man page
ctrlr Man page
ctrlr,optsol_robAna-method Man page
ctrlr<- Man page
ctrlr<-,optsol_robAna-method Man page
deadEndMetabolites Man page
deadEndMetabolites,modelorg-method Man page
deadEndMetabolites-methods Man page
delProb Man page
delProb,optObj_clpAPI-method Man page
delProb,optObj_cplexAPI-method Man page
delProb,optObj_glpkAPI-method Man page
delProb,optObj_lpSolveAPI-method Man page
delProb-methods Man page
deleted Man page
deleted,optsol_fluxdel-method Man page
deleted,optsol_genedel-method Man page
dels Man page
dels,optsol_fluxdel-method Man page
dels<- Man page
dels<-,optsol_fluxdel-method Man page
didFoot Man page
didFoot,sybilLog-method Man page
didFoot<- Man page
didFoot<-,sybilLog-method Man page
dim,modelorg-method Man page
dim,optObj-method Man page
doubleFluxDel Man page Source code
doubleGeneDel Man page Source code
doubleReact Man page Source code
editEnvir Man page Source code
emsg Man page
emsg,sybilError-method Man page
emsg<- Man page
emsg<-,sybilError-method Man page
enum Man page
enum,sybilError-method Man page
enum<- Man page
enum<-,sybilError-method Man page
ex_met Man page
ex_met,summaryOptsol-method Man page
ex_val Man page
ex_val,summaryOptsol-method Man page
exit_code Man page
exit_code,checksol-method Man page
exit_code<- Man page
exit_code<-,checksol-method Man page
exit_meaning Man page
exit_meaning,checksol-method Man page
exit_meaning<- Man page
exit_meaning<-,checksol-method Man page
exit_num Man page
exit_num,checksol-method Man page
exit_num<- Man page
exit_num<-,checksol-method Man page
fba Man page
fbaEasyConstraint Man page
fenc Man page
fenc,sybilLog-method Man page
fenc<- Man page
fenc<-,sybilLog-method Man page
fh Man page
fh,sybilLog-method Man page
fh<- Man page
fh<-,sybilLog-method Man page
file-class Man page
findExchReact Man page Source code
fldind Man page
fldind,optsol-method Man page
fldind,sysBiolAlg-method Man page
fldind<- Man page
fldind<-,optsol-method Man page
fldind<-,sysBiolAlg-method Man page
fluxDistribution Man page Source code
fluxDistribution-class Man page
fluxVar Man page Source code
fluxdels Man page
fluxdels,optsol_genedel-method Man page
fluxdels<- Man page
fluxdels<-,optsol_genedel-method Man page
fluxdist Man page
fluxdist,optsol-method Man page
fluxdist<- Man page
fluxdist<-,optsol-method Man page
fluxes Man page
fluxes,fluxDistribution-method Man page
fluxes,optsol-method Man page
fluxes<- Man page
fluxes<-,fluxDistribution-method Man page
fluxes<-,optsol-method Man page
fname Man page
fname,sybilLog-method Man page
fname<- Man page
fname<-,sybilLog-method Man page
fpath Man page
fpath,sybilLog-method Man page
fpath<- Man page
fpath<-,sybilLog-method Man page
fv Man page
geneDel Man page Source code
geneDeletion Man page Source code
genes Man page Man page
genes,modelorg-method Man page
genes,react-method Man page
genes<- Man page Man page
genes<-,modelorg-method Man page
genes<-,react-method Man page
getColPrim Man page
getColPrim,optObj_clpAPI,numeric-method Man page
getColPrim,optObj_cplexAPI,numeric-method Man page
getColPrim,optObj_glpkAPI,numeric-method Man page
getColPrim,optObj_lpSolveAPI,numeric-method Man page
getColPrim-methods Man page
getColsLowBnds Man page
getColsLowBnds,optObj_clpAPI,numeric-method Man page
getColsLowBnds,optObj_cplexAPI,numeric-method Man page
getColsLowBnds,optObj_glpkAPI,numeric-method Man page
getColsLowBnds,optObj_lpSolveAPI,numeric-method Man page
getColsLowBnds-methods Man page
getColsNames Man page
getColsNames,optObj_cplexAPI,numeric-method Man page
getColsNames,optObj_glpkAPI,numeric-method Man page
getColsNames,optObj_lpSolveAPI,numeric-method Man page
getColsNames-methods Man page
getColsUppBnds Man page
getColsUppBnds,optObj_clpAPI,numeric-method Man page
getColsUppBnds,optObj_cplexAPI,numeric-method Man page
getColsUppBnds,optObj_glpkAPI,numeric-method Man page
getColsUppBnds,optObj_lpSolveAPI,numeric-method Man page
getColsUppBnds-methods Man page
getFluxDist Man page
getFluxDist,optObj_clpAPI-method Man page
getFluxDist,optObj_cplexAPI-method Man page
getFluxDist,optObj_glpkAPI-method Man page
getFluxDist,optObj_lpSolveAPI-method Man page
getFluxDist,optsol-method Man page
getFluxDist-methods Man page
getMeanReturn Man page Source code
getMeanStatus Man page Source code
getNetFlux Man page Source code
getNumCols Man page
getNumCols,optObj_clpAPI-method Man page
getNumCols,optObj_cplexAPI-method Man page
getNumCols,optObj_glpkAPI-method Man page
getNumCols,optObj_lpSolveAPI-method Man page
getNumCols-methods Man page
getNumNnz Man page
getNumNnz,optObj_clpAPI-method Man page
getNumNnz,optObj_cplexAPI-method Man page
getNumNnz,optObj_glpkAPI-method Man page
getNumNnz-methods Man page
getNumRows Man page
getNumRows,optObj_clpAPI-method Man page
getNumRows,optObj_cplexAPI-method Man page
getNumRows,optObj_glpkAPI-method Man page
getNumRows,optObj_lpSolveAPI-method Man page
getNumRows-methods Man page
getObjCoefs Man page
getObjCoefs,optObj_clpAPI,numeric-method Man page
getObjCoefs,optObj_cplexAPI,numeric-method Man page
getObjCoefs,optObj_glpkAPI,numeric-method Man page
getObjCoefs,optObj_lpSolveAPI,numeric-method Man page
getObjCoefs-methods Man page
getObjDir Man page
getObjDir,optObj_clpAPI-method Man page
getObjDir,optObj_cplexAPI-method Man page
getObjDir,optObj_glpkAPI-method Man page
getObjDir,optObj_lpSolveAPI-method Man page
getObjDir-methods Man page
getObjVal Man page
getObjVal,optObj_clpAPI-method Man page
getObjVal,optObj_cplexAPI-method Man page
getObjVal,optObj_glpkAPI-method Man page
getObjVal,optObj_lpSolveAPI-method Man page
getObjVal-methods Man page
getReaction Man page
getReaction,modelorg,ANY-method Man page
getReaction,modelorg-method Man page
getRedCosts Man page
getRedCosts,optObj_clpAPI-method Man page
getRedCosts,optObj_cplexAPI-method Man page
getRedCosts,optObj_glpkAPI-method Man page
getRedCosts,optObj_lpSolveAPI-method Man page
getRedCosts,optsol_phpp-method Man page
getRedCosts-methods Man page
getRowsLowBnds Man page
getRowsLowBnds,optObj_clpAPI,numeric-method Man page
getRowsLowBnds,optObj_cplexAPI,numeric-method Man page
getRowsLowBnds,optObj_glpkAPI,numeric-method Man page
getRowsLowBnds,optObj_lpSolveAPI,numeric-method Man page
getRowsLowBnds-methods Man page
getRowsNames Man page
getRowsNames,optObj_cplexAPI,numeric-method Man page
getRowsNames,optObj_glpkAPI,numeric-method Man page
getRowsNames,optObj_lpSolveAPI,numeric-method Man page
getRowsNames-methods Man page
getRowsUppBnds Man page
getRowsUppBnds,optObj_clpAPI,numeric-method Man page
getRowsUppBnds,optObj_cplexAPI,numeric-method Man page
getRowsUppBnds,optObj_glpkAPI,numeric-method Man page
getRowsUppBnds,optObj_lpSolveAPI,numeric-method Man page
getRowsUppBnds-methods Man page
getSolStat Man page
getSolStat,optObj_clpAPI-method Man page
getSolStat,optObj_cplexAPI-method Man page
getSolStat,optObj_glpkAPI-method Man page
getSolStat,optObj_lpSolveAPI-method Man page
getSolStat-methods Man page
getSolverParm Man page
getSolverParm,optObj_clpAPI-method Man page
getSolverParm,optObj_cplexAPI-method Man page
getSolverParm,optObj_glpkAPI-method Man page
getSolverParm,optObj_lpSolveAPI-method Man page
getSolverParm-methods Man page
getsybilenv Man page Source code
glpkPtr-class Man page
gpr Man page Man page
gpr,modelorg-method Man page
gpr,react-method Man page
gpr<- Man page Man page
gpr<-,modelorg-method Man page
gpr<-,react-method Man page
gprRule Man page
gprRule,react-method Man page
gprRule<- Man page
gprRule<-,react-method Man page
gprRules Man page
gprRules,modelorg-method Man page
gprRules<- Man page
gprRules<-,modelorg-method Man page
hasEffect Man page
hasEffect,optsol_genedel-method Man page
hasEffect<- Man page
hasEffect<-,optsol_genedel-method Man page
image,summaryOptsol-method Man page
ind Man page
ind,ppProc-method Man page
ind2id Man page
ind2id,optsol_fluxdel-method Man page
ind2id,optsol_genedel-method Man page
ind<- Man page
ind<-,ppProc-method Man page
initProb Man page
initProb,optObj_clpAPI-method Man page
initProb,optObj_cplexAPI-method Man page
initProb,optObj_glpkAPI-method Man page
initProb,optObj_lpSolveAPI-method Man page
initProb-methods Man page
irrev Man page
irrev,modelorg_irrev-method Man page
irrev2rev Man page
irrev2rev,modelorg_irrev-method Man page
irrev2rev<- Man page
irrev2rev<-,modelorg_irrev-method Man page
irrev<- Man page
irrev<-,modelorg_irrev-method Man page
length,netFlux-method Man page
length,optsol-method Man page
length,reactId-method Man page
lethal Man page
lethal,optsol_fluxdel-method Man page
lmoma Man page
loadLPprob Man page
loadLPprob,optObj_clpAPI-method Man page
loadLPprob,optObj_cplexAPI-method Man page
loadLPprob,optObj_glpkAPI-method Man page
loadLPprob,optObj_lpSolveAPI-method Man page
loadLPprob-methods Man page
loadMatrixPerColumnLPSOLVE Man page Source code
loadQobj Man page
loadQobj,optObj_cplexAPI,Matrix-method Man page
loadQobj,optObj_cplexAPI,numeric-method Man page
loadQobj-methods Man page
logCall Man page
logCall,sybilLog-method Man page
logClose<- Man page
logClose<-,sybilLog-method Man page
logComment Man page
logComment,sybilLog-method Man page
logError Man page
logError,sybilLog,ANY,ANY-method Man page
logError,sybilLog,ANY,numeric-method Man page
logError,sybilLog-method Man page
logFH Man page
logFH,sybilLog-method Man page
logFileFH Man page
logFoot<- Man page
logFoot<-,sybilLog-method Man page
logHead Man page
logHead,sybilLog-method Man page
logMessage Man page
logMessage,sybilLog-method Man page
logOptimization Man page
logOptimization,sybilLog-method Man page
logOptimizationTH Man page
logOptimizationTH,sybilLog-method Man page
logStep<- Man page
logStep<-,sybilLog-method Man page
logWarning Man page
logWarning,sybilLog-method Man page
loglevel Man page
loglevel,sybilLog-method Man page
loglevel<- Man page
loglevel<-,sybilLog-method Man page
lowbnd Man page Man page
lowbnd,modelorg-method Man page
lowbnd,react-method Man page
lowbnd,reactId_Exch-method Man page
lowbnd<- Man page Man page
lowbnd<-,modelorg-method Man page
lowbnd<-,react-method Man page
lowbnd<-,reactId_Exch-method Man page
lpExtPtr-class Man page
lp_dir Man page
lp_dir,optsol-method Man page
lp_dir<- Man page
lp_dir<-,optsol,character-method Man page
lp_dir<-,optsol,factor-method Man page
lp_dir<-,optsol,numeric-method Man page
lp_num_cols Man page
lp_num_cols,optsol-method Man page
lp_num_cols<- Man page
lp_num_cols<-,optsol-method Man page
lp_num_rows Man page
lp_num_rows,optsol-method Man page
lp_num_rows<- Man page
lp_num_rows<-,optsol-method Man page
lp_obj Man page
lp_obj,optsol-method Man page
lp_obj<- Man page
lp_obj<-,optsol-method Man page
lp_ok Man page
lp_ok,optsol-method Man page
lp_ok<- Man page
lp_ok<-,optsol-method Man page
lp_stat Man page
lp_stat,optsol-method Man page
lp_stat<- Man page
lp_stat<-,optsol-method Man page
lstname Man page
lstname,sybilLog-method Man page
makeOptsolMO Man page Source code
matchrev Man page
matchrev,modelorg_irrev-method Man page
matchrev<- Man page
matchrev<-,modelorg_irrev-method Man page
maxSol Man page
maxSol,optsol_blockedReact-method Man page
maxSol,optsol_fluxVar-method Man page
mergeReact2Modelorg Man page Source code
met_attr Man page Man page
met_attr,modelorg-method Man page
met_attr,react-method Man page
met_attr<- Man page Man page
met_attr<-,modelorg-method Man page
met_attr<-,react-method Man page
met_comp Man page Man page
met_comp,modelorg-method Man page
met_comp,react-method Man page
met_comp<- Man page Man page
met_comp<-,modelorg-method Man page
met_comp<-,react-method Man page
met_de Man page
met_de,modelorg-method Man page
met_de<- Man page
met_de<-,modelorg-method Man page
met_id Man page Man page
met_id,modelorg-method Man page
met_id,react-method Man page
met_id,reactId_Exch-method Man page
met_id<- Man page Man page
met_id<-,modelorg-method Man page
met_id<-,react-method Man page
met_id<-,reactId_Exch-method Man page
met_name Man page Man page
met_name,modelorg-method Man page
met_name,react-method Man page
met_name<- Man page Man page
met_name<-,modelorg-method Man page
met_name<-,react-method Man page
met_num Man page
met_num,modelorg-method Man page
met_num<- Man page
met_num<-,modelorg-method Man page
met_pos Man page
met_pos,reactId_Exch-method Man page
met_pos<- Man page
met_pos<-,reactId_Exch-method Man page
met_single Man page
met_single,modelorg-method Man page
met_single<- Man page
met_single<-,modelorg-method Man page
method Man page
method,optObj-method Man page
method,optsol-method Man page
method<- Man page
method<-,optsol-method Man page
minSol Man page
minSol,optsol_blockedReact-method Man page
minSol,optsol_fluxVar-method Man page
mod2irrev Man page Source code
mod_attr Man page Man page
mod_attr,modelorg-method Man page
mod_attr,react-method Man page
mod_attr<- Man page Man page
mod_attr<-,modelorg-method Man page
mod_attr<-,react-method Man page
mod_compart Man page
mod_compart,modelorg-method Man page
mod_compart<- Man page
mod_compart<-,modelorg-method Man page
mod_desc Man page
mod_desc,modelorg-method Man page
mod_desc<- Man page
mod_desc<-,modelorg-method Man page
mod_id Man page
mod_id,modelorg-method Man page
mod_id,optsol-method Man page
mod_id,reactId-method Man page
mod_id,summaryOptsol-method Man page
mod_id<- Man page
mod_id<-,modelorg-method Man page
mod_id<-,optsol-method Man page
mod_id<-,reactId-method Man page
mod_id<-,summaryOptsol-method Man page
mod_key Man page
mod_key,modelorg-method Man page
mod_key,optsol-method Man page
mod_key,reactId-method Man page
mod_key,summaryOptsol-method Man page
mod_key<- Man page
mod_key<-,modelorg-method Man page
mod_key<-,optsol-method Man page
mod_key<-,reactId-method Man page
mod_key<-,summaryOptsol-method Man page
mod_name Man page
mod_name,modelorg-method Man page
mod_name<- Man page
mod_name<-,modelorg-method Man page
mod_obj Man page
mod_obj,optsol-method Man page
mod_obj,summaryOptsol-method Man page
mod_obj<- Man page
mod_obj<-,summaryOptsol-method Man page
modelorg Man page Source code
modelorg-class Man page
modelorg2ExPA Man page Source code
modelorg2text Man page Source code
modelorg2tsv Man page Source code
modelorg_irrev Man page Source code
modelorg_irrev-class Man page
moma Man page
mtf Man page
mtfEasyConstraint Man page
multiDel Man page Source code
nc Man page
nc,sysBiolAlg-method Man page
nc<- Man page
nc<-,sysBiolAlg-method Man page
netFlux Man page
netFlux-class Man page
nfluxes Man page
nfluxes,optsol-method Man page
nnzero,fluxDistribution-method Man page
nnzero,summaryOptsol-method Man page
nr Man page
nr,sysBiolAlg-method Man page
nr<- Man page
nr<-,sysBiolAlg-method Man page
num_of_fluxes Man page
num_of_fluxes,fluxDistribution-method Man page
num_of_prob Man page
num_of_prob,checksol-method Man page
num_of_prob,optsol-method Man page
num_of_prob<- Man page
num_of_prob<-,checksol-method Man page
num_of_prob<-,optsol-method Man page
nvar Man page
nvar,fluxDistribution-method Man page
nzeros Man page
nzeros,summaryOptsol-method Man page
obj_coef Man page Man page
obj_coef,modelorg-method Man page
obj_coef,optsol-method Man page
obj_coef,react-method Man page
obj_coef<- Man page Man page
obj_coef<-,modelorg-method Man page
obj_coef<-,optsol-method Man page
obj_coef<-,react-method Man page
obj_func Man page
obj_func,optsol-method Man page
obj_func<- Man page
obj_func<-,optsol-method Man page
object Man page
oneFluxDel Man page Source code
oneGeneDel Man page Source code
onlyChangeGPR Man page Source code
onlyCheckGPR Man page Source code
optObj Man page Source code
optObj-class Man page
optObj_clpAPI-class Man page
optObj_cplexAPI-class Man page
optObj_glpkAPI-class Man page
optObj_lpSolveAPI-class Man page
optimizeProb Man page
optimizeProb,modelorg-method Man page
optimizeProb,sysBiolAlg-method Man page
optimizeProb-methods Man page
optimizer Man page Source code
optsol Man page Source code
optsol-class Man page
optsol_blockedReact-class Man page
optsol_fluxVar-class Man page
optsol_fluxdel-class Man page
optsol_genedel-class Man page
optsol_optimizeProb-class Man page
optsol_phpp-class Man page
optsol_robAna-class Man page
pa Man page
pa,ppProc-method Man page
pa<- Man page
pa<-,ppProc-method Man page
phpp Man page Source code
plot,fluxDistribution,missing-method Man page
plot,optsol,missing-method Man page
plot,optsol_fluxVar,missing-method Man page
plot,optsol_phpp,character-method Man page
plot,optsol_phpp,missing-method Man page
plot,optsol_robAna,missing-method Man page
plot,summaryOptsol,missing-method Man page
plotRangeVar Man page
plotRangeVar,optsol_fluxVar-method Man page
pointerToProb Man page
pointerToProb-class Man page
postProc Man page
postProc,optsol_optimizeProb-method Man page
postProc<- Man page
postProc<-,optsol_optimizeProb-method Man page
ppProc Man page Source code
ppProc-class Man page
preProc Man page
preProc,optsol_optimizeProb-method Man page
preProc<- Man page
preProc<-,optsol_optimizeProb-method Man page
printExchange Man page
printExchange,summaryOptsol-method Man page
printMetabolite Man page
printMetabolite,modelorg-method Man page
printMetabolite-methods Man page
printObjFunc Man page
printObjFunc,modelorg-method Man page
printReaction Man page
printReaction,modelorg,ANY-method Man page
printReaction,react,ANY-method Man page
printReaction,summaryOptsol,modelorg-method Man page
printReaction-methods Man page
probType Man page
probType,optObj-method Man page
problem Man page
problem,sysBiolAlg-method Man page
promptSysBiolAlg Man page Source code
rate Man page
rate,netFlux-method Man page
react Man page
react,optsol_blockedReact-method Man page
react,optsol_fluxVar-method Man page
react-class Man page
react<- Man page
react<-,optsol_blockedReact-method Man page
react<-,optsol_fluxVar-method Man page
reactId Man page
reactId-class Man page
reactId_Exch Man page
reactId_Exch-class Man page
react_attr Man page Man page
react_attr,modelorg-method Man page
react_attr,react-method Man page
react_attr<- Man page Man page
react_attr<-,modelorg-method Man page
react_attr<-,react-method Man page
react_de Man page Man page
react_de,modelorg-method Man page
react_de,react-method Man page
react_de<- Man page Man page
react_de<-,modelorg-method Man page
react_de<-,react-method Man page
react_id Man page Man page
react_id,modelorg-method Man page
react_id,netFlux-method Man page
react_id,optsol-method Man page
react_id,react-method Man page
react_id,reactId-method Man page
react_id<- Man page Man page
react_id<-,modelorg-method Man page
react_id<-,netFlux-method Man page
react_id<-,optsol-method Man page
react_id<-,react-method Man page
react_id<-,reactId-method Man page
react_name Man page Man page
react_name,modelorg-method Man page
react_name,react-method Man page
react_name<- Man page Man page
react_name<-,modelorg-method Man page
react_name<-,react-method Man page
react_num Man page
react_num,modelorg-method Man page
react_num<- Man page
react_num<-,modelorg-method Man page
react_pos Man page
react_pos,reactId-method Man page
react_pos<- Man page
react_pos<-,reactId-method Man page
react_rev Man page Man page
react_rev,modelorg-method Man page
react_rev,react-method Man page
react_rev<- Man page Man page
react_rev<-,modelorg-method Man page
react_rev<-,react-method Man page
react_single Man page Man page
react_single,modelorg-method Man page
react_single,react-method Man page
react_single<- Man page Man page
react_single<-,modelorg-method Man page
react_single<-,react-method Man page
readModel Man page
readProb Man page
readProb,optObj_clpAPI,character-method Man page
readProb,optObj_cplexAPI,character-method Man page
readProb,optObj_glpkAPI,character-method Man page
readProb,optObj_lpSolveAPI,character-method Man page
readProb-methods Man page
readTEXTmod Man page Source code
readTSVmod Man page Source code
resetChanges Man page
resetChanges,sysBiolAlg-method Man page
resetChanges,sysBiolAlg_room-method Man page
resetChanges-methods Man page
return_codeLPSOLVE Man page Source code
rev2irrev Man page
rev2irrev,modelorg_irrev-method Man page
rev2irrev<- Man page
rev2irrev<-,modelorg_irrev-method Man page
rmReact Man page Source code
robAna Man page Source code
room Man page
rxnGeneMat Man page
rxnGeneMat,modelorg-method Man page
rxnGeneMat<- Man page
rxnGeneMat<-,modelorg-method Man page
s Man page
s,react-method Man page
s<- Man page
s<-,react-method Man page
scaleProb Man page
scaleProb,optObj_clpAPI-method Man page
scaleProb,optObj_cplexAPI-method Man page
scaleProb,optObj_glpkAPI-method Man page
scaleProb,optObj_lpSolveAPI-method Man page
scaleProb-methods Man page
sensitivityAnalysis Man page
sensitivityAnalysis,optObj_cplexAPI-method Man page
sensitivityAnalysis,optObj_glpkAPI-method Man page
sensitivityAnalysis-methods Man page
setColsNames Man page
setColsNames,optObj_clpAPI,numeric,character-method Man page
setColsNames,optObj_cplexAPI,numeric,character-method Man page
setColsNames,optObj_glpkAPI,numeric,character-method Man page
setColsNames,optObj_lpSolveAPI,numeric,character-method Man page
setColsNames-methods Man page
setObjDir Man page
setObjDir,optObj_clpAPI,character-method Man page
setObjDir,optObj_clpAPI,numeric-method Man page
setObjDir,optObj_cplexAPI,character-method Man page
setObjDir,optObj_cplexAPI,integer-method Man page
setObjDir,optObj_cplexAPI,numeric-method Man page
setObjDir,optObj_glpkAPI,character-method Man page
setObjDir,optObj_glpkAPI,integer-method Man page
setObjDir,optObj_glpkAPI,numeric-method Man page
setObjDir,optObj_lpSolveAPI,character-method Man page
setObjDir,optObj_lpSolveAPI,numeric-method Man page
setObjDir-methods Man page
setRhsZero Man page
setRhsZero,optObj_clpAPI-method Man page
setRhsZero,optObj_cplexAPI-method Man page
setRhsZero,optObj_glpkAPI-method Man page
setRhsZero,optObj_lpSolveAPI-method Man page
setRhsZero-methods Man page
setRowsNames Man page
setRowsNames,optObj_clpAPI,numeric,character-method Man page
setRowsNames,optObj_cplexAPI,numeric,character-method Man page
setRowsNames,optObj_glpkAPI,numeric,character-method Man page
setRowsNames,optObj_lpSolveAPI,numeric,character-method Man page
setRowsNames-methods Man page
setSolverParm Man page
setSolverParm,optObj_clpAPI-method Man page
setSolverParm,optObj_cplexAPI-method Man page
setSolverParm,optObj_glpkAPI-method Man page
setSolverParm,optObj_lpSolveAPI-method Man page
setSolverParm-methods Man page
show,checksol-method Man page
show,modelorg-method Man page
show,optsol-method Man page
shrinkMatrix Man page
shrinkMatrix,modelorg-method Man page
shrinkMatrix-methods Man page
singletonMetabolites Man page
singletonMetabolites,modelorg-method Man page
singletonMetabolites-methods Man page
solveLp Man page
solveLp,optObj_clpAPI-method Man page
solveLp,optObj_cplexAPI-method Man page
solveLp,optObj_glpkAPI-method Man page
solveLp,optObj_lpSolveAPI-method Man page
solveLp-methods Man page
solver Man page
solver,optObj-method Man page
solver,optsol-method Man page
solver<- Man page
solver<-,optsol-method Man page
status_code Man page
status_code,checksol-method Man page
status_code<- Man page
status_code<-,checksol-method Man page
status_meaning Man page
status_meaning,checksol-method Man page
status_meaning<- Man page
status_meaning<-,checksol-method Man page
status_num Man page
status_num,checksol-method Man page
status_num<- Man page
status_num<-,checksol-method Man page
stclear Man page Source code
stexists Man page Source code
stfirst Man page Source code
stinit Man page Source code
stlength Man page Source code
stlist Man page Source code
stpop Man page Source code
stpush Man page Source code
stseek Man page Source code
stshift Man page Source code
stunshift Man page Source code
subSys Man page Man page
subSys,modelorg-method Man page
subSys,react-method Man page
subSys<- Man page Man page
subSys<-,modelorg-method Man page
subSys<-,react-method Man page
summaryOptsol Man page Source code
summaryOptsol-class Man page
sybil Man page
sybil-deprecated Man page
sybil-package Man page
sybilError Man page Source code
sybilError-class Man page
sybilLog Man page Source code
sybilLog-class Man page
sybilStack Man page
sysBiolAlg Man page Source code
sysBiolAlg-class Man page
sysBiolAlg_fba Man page
sysBiolAlg_fba-class Man page
sysBiolAlg_fbaEasyConstraint Man page
sysBiolAlg_fbaEasyConstraint-class Man page
sysBiolAlg_fv Man page
sysBiolAlg_fv-class Man page
sysBiolAlg_lmoma Man page
sysBiolAlg_lmoma-class Man page
sysBiolAlg_moma Man page
sysBiolAlg_moma-class Man page
sysBiolAlg_mtf Man page
sysBiolAlg_mtf-class Man page
sysBiolAlg_mtfEasyConstraint Man page
sysBiolAlg_mtfEasyConstraint-class Man page
sysBiolAlg_room Man page
sysBiolAlg_room-class Man page
upgradeModelorg Man page Source code
uppbnd Man page Man page
uppbnd,modelorg-method Man page
uppbnd,react-method Man page
uppbnd,reactId_Exch-method Man page
uppbnd<- Man page Man page
uppbnd<-,modelorg-method Man page
uppbnd<-,react-method Man page
uppbnd<-,reactId_Exch-method Man page
uptMet Man page
uptMet,reactId_Exch-method Man page
uptReact Man page
uptReact,reactId_Exch-method Man page
uptake Man page
uptake,reactId_Exch-method Man page
uptake<- Man page
uptake<-,reactId_Exch-method Man page
verblevel Man page
verblevel,sybilLog-method Man page
verblevel<- Man page
verblevel<-,sybilLog-method Man page
version Man page
version,modelorg-method Man page
version<- Man page
version<-,modelorg-method Man page
writeProb Man page
writeProb,optObj_clpAPI,character-method Man page
writeProb,optObj_cplexAPI,character-method Man page
writeProb,optObj_glpkAPI,character-method Man page
writeProb,optObj_lpSolveAPI,character-method Man page
writeProb-methods Man page
wrong_solver_msg Man page Source code
wrong_type_msg Man page Source code
ypd Man page Source code
sybil documentation built on May 31, 2021, 5:08 p.m.