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# addSolver.R
# FBA and friends with R.
#
# Copyright (C) 2010-2014 Gabriel Gelius-Dietrich, Dpt. for Bioinformatics,
# Institute for Informatics, Heinrich-Heine-University, Duesseldorf, Germany.
# All right reserved.
# Email: geliudie@uni-duesseldorf.de
#
# This file is part of sybil.
#
# Sybil is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Sybil is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sybil. If not, see <http://www.gnu.org/licenses/>.
################################################
# Function: addSolver
#
#
#
addSolver <- function(solver, method, probType) {
stopifnot(inherits(solver, "character"),
inherits(method, "character"),
inherits(probType, "list"),
(length(solver) == 1L),
length(probType) == length(method))
# -------------------------------------------------------------------- #
# solver
if (solver %in% .SYBILenv$solvers) {
return(invisible(FALSE))
}
else {
.SYBILenv$solvers <- append(.SYBILenv$solvers, solver)
}
# -------------------------------------------------------------------- #
# method
.SYBILenv$solverMethods[[solver]] <- method
.SYBILenv$solverCtrlParm[[solver]] <- vector(length = length(method),
mode = "list")
names(.SYBILenv$solverCtrlParm[[solver]]) <- method
for (i in seq(along = method)) {
.SYBILenv$solverCtrlParm[[solver]][[i]] <- as.data.frame(NA)
}
# -------------------------------------------------------------------- #
# problem type
for (i in seq(along = method)) {
pt <- unique(probType[[i]])
stopifnot(inherits(pt, "character"))
prtp <- pt %in% names(.SYBILenv$ptype)
for (j in seq(along = pt[prtp])) {
.SYBILenv$ptype[[pt[prtp][j]]][[solver]] <- append(.SYBILenv$ptype[[pt[prtp][j]]][[solver]], method[i])
}
}
return(invisible(TRUE))
}
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