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# reassignFwBwMatch.R
# FBA and friends with R.
#
# Copyright (C) 2010-2014 Gabriel Gelius-Dietrich, Dpt. for Bioinformatics,
# Institute for Informatics, Heinrich-Heine-University, Duesseldorf, Germany.
# All right reserved.
# Email: geliudie@uni-duesseldorf.de
#
# This file is part of sybil.
#
# Sybil is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Sybil is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sybil. If not, see <http://www.gnu.org/licenses/>.
################################################
# Function: .reassignFwBwmatch
#
#
# The function .reassignFwBwmatch() is inspired by the function
# reassingFwBwMatch() contained in the COBRA Toolbox.
# The algorithm is the same.
.reassignFwBwMatch <- function(matchrev, keep) {
ind <- keep * 1
ind[keep == TRUE] <- 1:sum(ind)
num_match <- sum(keep == TRUE)
match <- integer(num_match)
j <- 0
for (i in 1:length(matchrev)) {
if (keep[i] == TRUE) {
j <- j + 1
if (matchrev[i] > 0) {
if (keep[matchrev[i]] == TRUE) {
match[j] <- ind[matchrev[i]]
}
}
}
}
return(as.integer(match))
}
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