modelorg_irrev-class: Class for Metabolic Networks in Irreversible Format.

In sybil: Efficient Constrained Based Modelling

Description

Structure of the class "modelorg_irrev". Objects of that class are returned by the function mod2irrev.

Objects from the Class

Objects can be created by calls of the function modelorg_irrev:

test <- modelorg_irrev(id = "foo", name = "bar").

Slots

irrev:

Object of class "logical" indicating if the model is in irreversible format.

matchrev:

Object of class "integer" matching of forward and backward reactions of a reversible reaction.

rev2irrev:

Object of class "matrix" containing the reaction id's of the corresponding reactions in irreversible format.

irrev2rev:

Object of class "integer" containing the reaction id's of the corresponding reaction in reversible format.

Extends

Class "modelorg", directly.

Methods

irrev<-:

signature(object = "modelorg_irrev"): sets the irrev slot.

irrev:

signature(object = "modelorg_irrev"): gets the irrev slot.

matchrev<-:

signature(object = "modelorg_irrev"): sets the matchrev slot.

matchrev:

signature(object = "modelorg_irrev"): gets the matchrev slot.

rev2irrev<-:

signature(object = "modelorg_irrev"): sets the rev2irrev slot.

rev2irrev:

signature(object = "modelorg_irrev"): gets the rev2irrev slot.

irrev2rev<-:

signature(object = "modelorg_irrev"): sets the irrev2rev slot.

irrev2rev:

signature(object = "modelorg_irrev"): gets the irrev2rev slot.

Author(s)

Gabriel Gelius-Dietrich <[e-mail]>

Maintainer: Mayo Roettger <[e-mail]>

See Also

modelorg

Examples

  showClass("modelorg_irrev")

sybil documentation built on May 31, 2021, 5:08 p.m.