printMetabolite-methods: Print Rows of the Stoichiometric Matrix
In sybil: Efficient Constrained Based Modelling

Description Usage Arguments Details Value Methods Author(s) See Also

Print the rows of the stoichiometric matrix or an FBA model in CPLEX LP file format.

1 2	## S4 method for signature 'modelorg' printMetabolite(object, met, FBAlp = FALSE, printOut = TRUE, ...)

`object`	An object of class `modelorg`.
`met`	A numeric or character vector containing the metabolite id's of metabolites to print out. If missing, all metabolites given in the model are used.
`FBAlp`	A single logical value. If set to `TRUE`, the output will be in CPLEX LP file format, including the objective function given in the model and reaction bounds. Additionally, if set to `TRUE`, argument `met` will be ignored; all metabolites present in the model are used. See also Details. Default: `FALSE`.
`printOut`	A single Boolean value. If set to `TRUE`, the desired reactions will be printed via the `cat` function. Default: `TRUE`.
`...`	Further arguments passed to `cat`, e.g. argument `file`.

Metabolite id's beginning with a digit or period will be prefixed by the letter "r", reaction id's beginning with a digit or period will be prefixed by the letter "x" and square brackets in reaction or metabolite id's will be replaced by round brackets.

The modelorg method returns a character vector of length equal to the number of metabolites given in argument met, invisibly. Each string represents the reaction participation of one particular metabolite.