singletonMetabolites-methods: Identify Singleton Metabolites
In sybil: Efficient Constrained Based Modelling
Description
Usage
Arguments
Value
Methods
Author(s)
See Also
Description
Search a metabolic network for metabolites, which appear only once in the
stoichiometric matrix.
Usage
1
2
## S4 method for signature 'modelorg'
singletonMetabolites(object,tol,retIds)
Arguments
object
An object of class modelorg.
tol
A numeric tolerance value: an entry of the stoichiometric matrix s_ij
is considered to be non-zero if abs(s_ij) > tol is TRUE.
Default: SYBIL_SETTINGS("TOLERANCE").
retIds
Boolean. If set to TRUE, a list containing metabolite id's will be
returned, otherwise a list of logical vectors.
Default: TRUE.
Value
A list will be returned:
smet
singleton metabolites
sreact
reactions containing singleton metabolites
Methods
signature(object = "modelorg")-
method to use with class modelorg.
Author(s)
Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
See Also
Class modelorg and readTSVmod.
sybil documentation built on May 31, 2021, 5:08 p.m.
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Description Usage Arguments Value Methods Author(s) See Also
Description
Search a metabolic network for metabolites, which appear only once in the stoichiometric matrix.
Usage
1 2 | ## S4 method for signature 'modelorg'
singletonMetabolites(object,tol,retIds)
|
Arguments
object |
An object of class |
tol |
A numeric tolerance value: an entry of the stoichiometric matrix s_ij
is considered to be non-zero if abs(s_ij) > tol is |
retIds |
Boolean. If set to |
Value
A list will be returned:
smet |
singleton metabolites |
sreact |
reactions containing singleton metabolites |
Methods
signature(object = "modelorg")-
method to use with class
modelorg.
Author(s)
Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
See Also
Class modelorg and readTSVmod.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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