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# modelorg_irrevClass.R
# FBA and friends with R.
#
# Copyright (C) 2010-2014 Gabriel Gelius-Dietrich, Dpt. for Bioinformatics,
# Institute for Informatics, Heinrich-Heine-University, Duesseldorf, Germany.
# All right reserved.
# Email: geliudie@uni-duesseldorf.de
#
# This file is part of sybil.
#
# Sybil is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Sybil is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sybil. If not, see <http://www.gnu.org/licenses/>.
# modelorg_irrevClass
#------------------------------------------------------------------------------#
# definition of the class modelorg_irrev #
#------------------------------------------------------------------------------#
setClass("modelorg_irrev",
representation(
irrev = "logical",
matchrev = "integer",
rev2irrev = "matrix",
irrev2rev = "integer"
),
contains = "modelorg"
)
#------------------------------------------------------------------------------#
# user constructor #
#------------------------------------------------------------------------------#
modelorg_irrev <- function(id, name) {
if (missing(id) || missing(name)) {
stop("Creating an object of class modelorg_irrev needs name and id!")
}
id <- as.character(id)
name <- as.character(name)
obj <- new("modelorg_irrev", id = id, name = name)
return(obj)
}
#------------------------------------------------------------------------------#
# default constructor #
#------------------------------------------------------------------------------#
setMethod(f = "initialize",
signature = "modelorg_irrev",
definition = function(.Object, id, name) {
if (!missing(id) || !missing(name)) {
.Object <- callNextMethod(.Object, id = id, name = name)
}
return(.Object)
}
)
#------------------------------------------------------------------------------#
# setters and getters #
#------------------------------------------------------------------------------#
# irrev
setMethod("irrev", signature(object = "modelorg_irrev"),
function(object) {
return(object@irrev)
}
)
setReplaceMethod("irrev", signature(object = "modelorg_irrev"),
function(object, value) {
object@irrev <- value
return(object)
}
)
# matchrev
setMethod("matchrev", signature(object = "modelorg_irrev"),
function(object) {
return(object@matchrev)
}
)
setReplaceMethod("matchrev", signature(object = "modelorg_irrev"),
function(object, value) {
object@matchrev <- value
return(object)
}
)
# rev2irrev
setMethod("rev2irrev", signature(object = "modelorg_irrev"),
function(object) {
return(object@rev2irrev)
}
)
setReplaceMethod("rev2irrev", signature(object = "modelorg_irrev"),
function(object, value) {
object@rev2irrev <- value
return(object)
}
)
# irrev2rev
setMethod("irrev2rev", signature(object = "modelorg_irrev"),
function(object) {
return(object@irrev2rev)
}
)
setReplaceMethod("irrev2rev", signature(object = "modelorg_irrev"),
function(object, value) {
object@irrev2rev<- value
return(object)
}
)
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