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# doInRound.R
# FBA and friends with R.
#
# Copyright (C) 2010-2014 Gabriel Gelius-Dietrich, Dpt. for Bioinformatics,
# Institute for Informatics, Heinrich-Heine-University, Duesseldorf, Germany.
# All right reserved.
# Email: geliudie@uni-duesseldorf.de
#
# This file is part of sybil.
#
# Sybil is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Sybil is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sybil. If not, see <http://www.gnu.org/licenses/>.
################################################
# Function: .doInRound
#
#
#
.doInRound <- function(indRounds, maxRounds) {
if (maxRounds < 1) {
stop("Argument 'maxRounds' must be > 0")
}
if (is.null(indRounds)) {
runPP <- c(1:maxRounds)
}
else {
if (is(indRounds, "character")) {
# make indRounds integer values
DIR <- as.integer(indRounds)
# first value is treated as offset, if indRounds
# contains two elements (more than two elements are ignored)
if (length(DIR) > 1) {
offs <- DIR[1]
DIR <- ifelse(DIR[2] < 1, 1L, abs(DIR[2]))
}
else {
offs <- 0L
DIR <- ifelse(DIR[1] < 1, 1L, abs(DIR[1]))
}
# when we will run pre/post processing
runPP <- seq(from = (DIR+offs), to = maxRounds, by = DIR)
runPP <- runPP[runPP > 0]
}
else if (is(indRounds, "numeric")) {
runPP <- sort(as.integer(indRounds[indRounds > 0]))
}
else {
warning("Argument 'indRounds' must be numeric or character")
runPP <- c(1:maxRounds)
}
}
return(runPP)
}
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