summaryOptsol: Summarize Objects of Class Optsol
In sybil: Efficient Constrained Based Modelling

Description Usage Arguments Details Value Author(s) See Also

Generates a quick overview of results of simulations stored in objects of class optsol.

1	summaryOptsol(opt, mod, perc = 1, tol = SYBIL_SETTINGS("TOLERANCE"))

`opt`	An object of class `optsol`.
`mod`	An object of class `modelorg`.
`perc`	A single numeric value in between zero and one indicating how close a flux value has to reach a flux boundary in order to be called “limiting”, see Details below. Default: `1`.
`tol`	A tolerance value, see Details below. Default: `SYBIL_SETTINGS("TOLERANCE")`.

The function summaryOptsol generates a summary of the simulations resulting in the object given in argument opt. Both model id's, of the optsol object and of the modelorg object must be identical. The resulting object of class summaryOptsol contains information about the number of zeros and non-zeros in the flux distribution, the substrates and products and about the limiting reactions.

A reaction i is called “limiting”, if its flux value v_i is non-zero: abs(v_i) > tol and if its flux value hits the flux boundaries: v_i <= v_i,min * perc || v_i >= v_i,max * perc.

An object of class summaryOptsol if a flux distribution exists in argument opt, otherwise a summary of the objective values (mod_obj) is returned.

Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>

Class optsol, class modelorg and class summaryOptsol.

sybil documentation built on May 31, 2021, 5:08 p.m.