API for symphony
Efficient and Precise Single-Cell Reference Atlas Mapping

Global functions
buildReference Man page Source code
buildReferenceFromHarmonyObj Man page Source code
calcPerCellMappingMetric Man page Source code
calcPerClusterMappingMetric Man page Source code
calcknncorr Man page Source code
calcknncorrWithinQuery Man page Source code
calcknncorrWithinQueryBatch Source code
compute_ref_cache Source code
cosine_normalize_cpp Source code
evaluate Man page Source code
exp_mean Source code
findVariableGenes Man page Source code
get_betas Source code
knnPredict Man page Source code
knnPredictCos Source code
log_vmr Source code
mapQuery Man page Source code
moe_correct_ref Source code
normalizeCLR_dgc Source code
normalizeData Source code
pbmcs_exprs_small Man page
pbmcs_meta_small Man page
plotReference Man page Source code
rowMeans Source code
rowMeansWeighted_dgc Source code
rowSDs Man page Source code
rowSDsWeighted_dgc Source code
rowSDs_dgc Source code
rowVarSDs_dgc Source code
rowVars Source code
rowVarsStd Source code
runPCAQueryAlone Man page Source code
scaleData Source code
scaleDataWithStats Man page Source code
scaleRowsWithStats_dgc Source code
scaleRows_dgc Source code
soft_cluster Source code
soft_kmeans Source code
soft_kmeans_cpp Source code
symphony Man page
vargenes_vst Man page Source code
symphony documentation built on Aug. 5, 2021, 9:07 a.m.