runPCAQueryAlone: Runs a standard PCA pipeline on query (1 batch). Assumes...
In symphony: Efficient and Precise Single-Cell Reference Atlas Mapping
runPCAQueryAlone R Documentation
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Description
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Usage
runPCAQueryAlone(query_exp, topn = 2000, d = 20, seed = 1)
Arguments
query_exp
Query expression matrix (genes x cells)
topn
Number of variable genes to use
d
Number of dimensions
seed
random seed
Value
A matrix of PCs by cells
symphony documentation built on Jan. 17, 2023, 1:13 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| runPCAQueryAlone | R Documentation |
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Description
Runs a standard PCA pipeline on query (1 batch). Assumes query_exp is already normalized.
Usage
runPCAQueryAlone(query_exp, topn = 2000, d = 20, seed = 1)
Arguments
query_exp |
Query expression matrix (genes x cells) |
topn |
Number of variable genes to use |
d |
Number of dimensions |
seed |
random seed |
Value
A matrix of PCs by cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.