View source: R/findVariableGenes.R

findVariableGenes | R Documentation |

Function to find variable genes using mean variance relationship method

findVariableGenes( X, groups, min_expr = 0.1, max_expr = Inf, min_dispersion = 0, max_dispersion = Inf, num.bin = 20, binning.method = "equal_width", return_top_n = 0 )

`X` |
expression matrix |

`groups` |
vector of groups |

`min_expr` |
min expression cutoff |

`max_expr` |
max expression cutoff |

`min_dispersion` |
min dispersion cutoff |

`max_dispersion` |
max dispersion cutoff |

`num.bin` |
number of bins to use for scaled analysis |

`binning.method` |
how bins are computed |

`return_top_n` |
returns top n genes |

A data.frame of variable genes

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