vargenes_vst: Function to find variable genes using variance stabilizing...

In symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Function to find variable genes using variance stabilizing transform (vst) method

Description

Function to find variable genes using variance stabilizing transform (vst) method

Usage

vargenes_vst(object, groups, topn, loess.span = 0.3)

Arguments

object	expression matrix
groups	finds variable genes within each group then pools
topn	Return top n genes
loess.span	Loess span parameter used when fitting the variance-mean relationship

Value

A data.frame of variable genes, with means and standard deviations.

symphony documentation built on Jan. 17, 2023, 1:13 a.m.