evaluate: Function for evaluating F1 by cell type, adapted from...

In symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Function for evaluating F1 by cell type, adapted from automated cell type identifiaction benchmarking paper (Abdelaal et al. Genome Biology, 2019)

Description

Function for evaluating F1 by cell type, adapted from automated cell type identifiaction benchmarking paper (Abdelaal et al. Genome Biology, 2019)

Usage

evaluate(true, predicted)

Arguments

true	vector of true labels
predicted	vector of predicted labels

Value

A list of results with confusion matrix ($Conf), median F1-score ($MedF1), F1 scores per class ($F1), and accuracy ($Acc).

symphony documentation built on Jan. 17, 2023, 1:13 a.m.