assymetry: Normalised log assymetry.
In tcR: Advanced Data Analysis of Immune Receptor Repertoires

Description Usage Arguments Details Value

Compute the value of the normalised log assymetry measure for the given data.frames of the counts of shared clones.

1	assymetry(.alpha, .beta = NULL, .by = "CDR3.nucleotide.sequence")

`.alpha`	First mitcr data.frame or a list with data.frames.
`.beta`	Second mitcr data.frame or NULL if `.alpha` is a list.
`.by`	Which column use to merge. See "Details".

Merge two data frames by the given column and compute value Sum(Log((Percentage for shared clone S from alpha) / (Percentage for shared clone S from beta))) / (# of shared clones).

Value of the normalised log assymetry measure for the given data.frames.

tcR documentation built on July 2, 2020, 3:18 a.m.