Files in tcR
Advanced Data Analysis of Immune Receptor Repertoires
MD5
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/neighbour.search.cpp
src/RcppExports.cpp
src/Makevars
data/genesegments.rda
data/datalist
data/twa.rda
data/beta.prob.rda
data/twb.rda
R/repdiversity.R
R/spectrum.R
R/strtools.R
R/docdata.R
R/infoanalysis.R
R/RcppExports.R
R/shared.R
R/onload.R
R/io.R
R/filters.R
R/diversity.R
R/stats.R
R/crosses.R
R/measures.R
R/segments.R
R/datatools.R
R/plots.R
R/repoverlap.R
R/kmers.R
R/mitcr.R
R/dataproc.R
R/parsing.R
R/graph.R
vignettes/tcrvignette.Rmd
man/repOverlap.Rd
man/entropy.seg.Rd
man/vis.gene.usage.Rd
man/spectratype.Rd
man/shared.repertoire.Rd
man/vis.top.proportions.Rd
man/intersectClonesets.Rd
man/ozScore.Rd
man/dot-column.choice.Rd
man/bootstrap.tcr.Rd
man/twinsdata.Rd
man/vis.pca.Rd
man/vis.clonal.space.Rd
man/cloneset.stats.Rd
man/entropy.Rd
man/permutDistTest.Rd
man/pca2euclid.Rd
man/vis.radarlike.Rd
man/find.clonotypes.Rd
man/column.summary.Rd
man/set.pb.Rd
man/group.clonotypes.Rd
man/tailbound.proportion.Rd
man/get.deletions.alpha.Rd
man/mutated.neighbours.Rd
man/vis.logo.Rd
man/fix.alleles.Rd
man/vis.heatmap.Rd
man/permutedf.Rd
man/generate.kmers.Rd
man/set.group.vector.Rd
man/rarefaction.Rd
man/assymetry.Rd
man/codon.variants.Rd
man/top.fun.Rd
man/vis.rarefaction.Rd
man/pca.segments.Rd
man/kmer.table.Rd
man/repSave.Rd
man/gc.content.Rd
man/dot-fix.listnames.Rd
man/dot-verbose.msg.Rd
man/vis.clonal.dynamics.Rd
man/set.rank.Rd
man/geneUsage.Rd
man/parse.cloneset.Rd
man/AA_TABLE.Rd
man/vis.count.len.Rd
man/find.similar.sequences.Rd
man/cosine.similarity.Rd
man/mutation.network.Rd
man/get.all.substrings.Rd
man/barcodes.to.reads.Rd
man/top.cross.Rd
man/beta.prob.Rd
man/segments.alphabets.Rd
man/get.kmers.Rd
man/has.class.Rd
man/set.people.vector.Rd
man/matrixdiagcopy.Rd
man/startmitcr.Rd
man/parse.folder.Rd
man/get.inframes.Rd
man/clonal.space.homeostasis.Rd
man/vis.number.count.Rd
man/cosine.sharing.Rd
man/convergence.index.Rd
man/reverse.string.Rd
man/vis.kmer.histogram.Rd
man/generate.tcr.Rd
man/sample.clones.Rd
man/kmer.profile.Rd
man/vis.shared.clonotypes.Rd
man/repDiversity.Rd
man/segments.list.Rd
man/matrixSubgroups.Rd
man/vis.group.boxplot.Rd
man/dot-add.legend.Rd
man/check.distribution.Rd
man/sample2D.Rd
man/gibbs.sampler.Rd
man/revcomp.Rd
man/repLoad.Rd
man/contamination.stats.Rd
man/resample.Rd
man/apply.symm.Rd
man/loglikelihood.Rd
man/inverse.simpson.Rd
inst/library.report.Rmd
inst/CITATION
inst/crossanalysis.report.Rmd
inst/doc/tcrvignette.html
inst/doc/tcrvignette.Rmd
inst/doc/tcrvignette.R
