Alphabets of TCR and Ig gene segments.

Description

Character vector with names for segments. With tcR we provided alphabets for all alpha, beta, gamma and delta chains gene segments.

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59

Format

Each <SPECIES>_<GENES> is a character vector. <SPECIES> is an identifier of species, <GENES> is concatenated three identifiers of cell type ("TR**" for TCR, "IG**" for Ig), chain (e.g., "**A*" for alpha chains) and gene segment ("***V" for V(ariable) gene segment, "***J" for J(oining) gene segment, "***D" for D(iversity) gene segment).

Examples

1
2
3
4
## Not run: 
HUMAN_TRBV[1]  #  => "TRBV10-1"

## End(Not run)

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.