set.group.vector: Set group attribute for vertices of a mutation network

In tcR: Advanced Data Analysis of Immune Receptor Repertoires

Description

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Usage

set.group.vector(.G, .attr.name, .groups)

get.group.names(.G, .attr.name, .V = V(.G), .paste = T)

Arguments

.G	Mutation network.
.attr.name	Name of the new vertex attribute.
.groups	List with integer vector with indices of subjects for each group.
.V	Indices of vertices.
.paste	if T then return character string with concatenated group names, else return list with character vectors with group names.

Value

igraph object with new vertex attribute .attr.name with binary strings for set.group.vector. Return character vector for get.group.names.

Examples

## Not run: 
data(twb)
twb.shared <- shared.repertoire(twb)
G <- mutation.network(twb.shared)
G <- set.group.vector(G, "twins", list(A = c(1,2), B = c(3,4)))  # <= refactor this
get.group.names(G, "twins", 1)       # "A|B"
get.group.names(G, "twins", 300)     # "A"
get.group.names(G, "twins", 1, F)    # list(c("A", "B"))
get.group.names(G, "twins", 300, F)  # list(c("A"))
# Because we have only two groups, we can assign more readable attribute.
V(G)$twin.names <- get.group.names(G, "twins")
V(G)$twin.names[1]  # "A|B"
V(G)$twin.names[300]  # "A"

## End(Not run)

tcR documentation built on July 2, 2020, 3:18 a.m.