segments.list: Segment data.

In tcR: Advanced Data Analysis of Immune Receptor Repertoires

Description

segments is a list with 5 data frames with data of human alpha-beta chain segments. Elements names as "TRAV", "TRAJ", "TRBV", "TRVJ", "TRVD". Each data frame consists of 5 columns:

- V.allelles / J.allelles / D.allelles - character column with names of V/D/J-segments.

- CDR3.position - position in the full nucleotide segment sequence where CDR3 starts.

- Full.nucleotide.sequence - character column with segment CDR1-2-3 sequence.

- Nucleotide.sequence - character column with segment CDR3 sequences.

- Nucleotide.sequence.P - character column with segment CDR3 sequences with P-insertions.

Format

genesegments is a list with data frames.

Examples

## Not run: 
data(genesegments)
genesegments$Nucleotide.sequence[segments$TRBV[,1] == "TRBV10-1"]

## End(Not run)

tcR documentation built on July 2, 2020, 3:18 a.m.