vis.clonal.dynamics: Visualise clonal dynamics among time points.

In tcR: Advanced Data Analysis of Immune Receptor Repertoires

Description

Visualise clonal dynamics (i.e., changes in frequency or count) with error bars of given clones among time points.

Usage

vis.clonal.dynamics(.changed, .lower, .upper, .log = T)

Arguments

.changed	Result from the find.clonotypes function, i.e. data frame with first columns with sequences (nucleotide or amino acid) and other columns are columns with frequency / count for each time point for each clone.
.lower	Similar to .changed but values are lower bound for clonal count / frequency.
.upper	Similar to .changed but values are upper bound for clonal count / frequency.
.log	if T then log-scale y-axis.

Value

ggplot object.

tcR documentation built on July 2, 2020, 3:18 a.m.