vis.clonal.dynamics: Visualise clonal dynamics among time points.

Description Usage Arguments Value

Description

Visualise clonal dynamics (i.e., changes in frequency or count) with error bars of given clones among time points.

Usage

1
vis.clonal.dynamics(.changed, .lower, .upper, .log = T)

Arguments

.changed

Result from the find.clonotypes function, i.e. data frame with first columns with sequences (nucleotide or amino acid) and other columns are columns with frequency / count for each time point for each clone.

.lower

Similar to .changed but values are lower bound for clonal count / frequency.

.upper

Similar to .changed but values are upper bound for clonal count / frequency.

.log

if T then log-scale y-axis.

Value

ggplot object.


tcR documentation built on July 2, 2020, 3:18 a.m.