tcgsaseq: Time-Course Gene Set Analysis for RNA-Seq Data

Analyze RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with longitudinal data. Method is detailed in: Agniel & Hejblum (2017) <doi: 10.1093/biostatistics/kxx005>, Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics, 18(4):589-604.

Getting started

Package details

AuthorDenis Agniel [aut], Boris P. Hejblum [aut, cre], Marine Gauthier [aut]
MaintainerBoris P. Hejblum <>
LicenseGPL-2 | file LICENSE
Package repositoryView on CRAN
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tcgsaseq documentation built on Sept. 13, 2020, 5:13 p.m.