tcgsaseq: Time-Course Gene Set Analysis for RNA-Seq Data

Gene set analysis of longitudinal RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Method is detailed in: Agniel D, Hejblum BP (2016) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data <arXiv:1605.02351>.

AuthorDenis Agniel [aut], Boris P. Hejblum [aut, cre]
Date of publication2017-02-21 23:11:17
MaintainerBoris P. Hejblum <boris.hejblum@u-bordeaux.fr>
LicenseGPL-2 | file LICENSE
Version1.4.1

View on CRAN

Functions

\%^\% Man page
baduel Man page
baduel_5gs Man page
baduel_gmt Man page
compute_sim_voomlike Man page
compute_sim_voomlike_genewise Man page
data_sim_voomlike Man page
deseq_fn Man page
design Man page
expr_norm_corr Man page
nb_sim_fn Man page
nonlin_sim_fn Man page
nonlin_sim_fn Man page
PBT Man page
PBT_gmt Man page
qAbundanceDist Man page
sp_weights Man page
tcgsaseq Man page
tcgsa_seq Man page
tcgsaseq-package Man page
vc_score Man page
vc_score_h Man page
vc_test_asym Man page
vc_test_perm Man page
voom_weights Man page

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