nb_sim_fn: Computing negative binomial simulations results

In tcgsaseq: Time-Course Gene Set Analysis for RNA-Seq Data

Description

Computing negative binomial simulations results

Usage

nb_sim_fn(
  n = 250,
  n_t = 5,
  beta = 2,
  nGenes = 1000,
  re_sd = 1,
  gene_sd = 1,
  type
)

Examples

## Not run: 
for (n in c(50,100, 150)){
standard.l <- list()
betas <- seq(-2, 2, length = 11)
stdl.l <- list()
ind <- 0
for (i in 1:11){
 ind <- ind + 1

 if (betas[i] == 0){
   gsd <- rsd <- 0
 }else{
   gsd <- rsd <- 1
 }

 standard.sim <- nb_sim_fn(type = 'standard',
                           nGenes = 100,
                           n = n,
                           beta = betas[i],
                           re_sd = rsd,
                           gene_sd = gsd,
                           n_t = 5)

 stdl.l[[ind]] <- c(standard.sim, beta = betas[i])
}
standard.l <- do.call(rbind, stdl.l)
}

## End(Not run)

tcgsaseq documentation built on Sept. 13, 2020, 5:13 p.m.