tcgsaseq
tcgsaseq
capabilities and features have been incorporated into the
Bioconductor
package
dearseq
.
tcgsaseq
will be kept as the legacy companion package of the 2017
Agniel & Hejblum
Biostatistics
article, but will not be further developped or extended.
If you are interested in using tcgsaseq, you should probably rather look
into the newer and more comprehensive dearseq
package.
tcgsaseq
is a package for analyzing RNA-seq data. The 2 main functions
of the package are varcompseq
and tcgsa_seq
:
varcompseq
.tcgsa_seq
.The method implemented in this package is detailed in the following article:
Agniel D & Hejblum BP (2017). Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, 2017, Biostatistics, 18(4):589-604. arXiv:1605.02351 DOI: 10.1093/biostatistics/kxx005
The easiest way to get tcgsaseq
is to install it from
CRAN:
install.packages("tcgsaseq")
Or to get the development version from GitHub:
#install.packages("devtools")
devtools::install_github("denisagniel/tcgsaseq")
– Denis Agniel and Boris Hejblum
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.