tcgsaseq capabilities and features have been incorporated into the
tcgsaseq will be kept as the legacy companion package of the 2017
Agniel & Hejblum
article, but will not be further developped or extended.
If you are interested in using tcgsaseq, you should probably rather look
into the newer and more comprehensive
tcgsaseq is a package for analyzing RNA-seq data. The 2 main functions
of the package are
The method implemented in this package is detailed in the following article:
Agniel D & Hejblum BP (2017). Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, 2017, Biostatistics, 18(4):589-604. arXiv:1605.02351 DOI: 10.1093/biostatistics/kxx005
The easiest way to get
tcgsaseq is to install it from
Or to get the development version from GitHub:
– Denis Agniel and Boris Hejblum
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