PBT_gmt: PBT gene sets related to kidney transplant

In tcgsaseq: Time-Course Gene Set Analysis for RNA-Seq Data

Description

9 Pathogenesis Based Transcripts (PBT) gene sets specifically related to kidney transplant

Usage

data(PBT_gmt)

Format

a gmt object containing 9 gene sets specific to kidney transplant (see GSA.read.gmt)

Source

https://www.ualberta.ca/medicine/institutes-centres-groups/atagc/research/gene-lists.html

References

Halloran PF, De Freitas DG, Einecke G, et al., The molecular phenotype of kidney transplants: Personal viewpoint, Am J Transplant, 10: 2215-2222, 2010. .

Sellares J, Reeve J, Loupy A, et al., Molecular diagnosis of antibody-mediated rejection in human kidney transplants, Am J Transplant, 13:971-983, 2013.

Broin PO, Hayde N, Bao Y, et al., A pathogenesis-based transcript signature in donor-specific antibody-positive kidney transplant patients with normal biopsies, Genomics Data 2: 357-60, 2014.

Examples

data("PBT_gmt")
PBT_gmt

tcgsaseq documentation built on Sept. 13, 2020, 5:13 p.m.