Man pages for tcgsaseq
Time-Course Gene Set Analysis for RNA-Seq Data
| baduel_5gs | Small portion of RNA-seq data from plant physiology study. |
| compute_sim_voomlike | Computing simulations results |
| compute_sim_voomlike_genewise | Computing simulations results observation-wise |
| data_sim_voomlike | Data simulation function |
| deseq_fn | Computes gene-wise p-values from DESeq2 method using... |
| dsFDR | Estimating the False Discovery Rate |
| grapes-pow-grapes | Power for matrix elements |
| nb_sim_fn | Computing negative binomial simulations results |
| nonlin_sim_fn | Computing nonlinear simulations results |
| PBT_gmt | PBT gene sets related to kidney transplant |
| perm_pe | Exact permutation p-values |
| qAbundanceDist | Gene abundance proportion distribution of RNA-seq data. |
| sp_weights | Non parametric local heteroscedasticity weights |
| tcgsaseq | tcgsaseq: a package to perform Time-course Gene Set Analysis... |
| tcgsa_seq | Time-course Gene Set Analysis |
| varcompseq | Variance component testing for RNA-seq data analysis |
| vc_score | Computes variance component test statistic for longitudinal |
| vc_score_h | Computes variance component test statistic for homogeneous... |
| vc_score_h_perm | Computes variance component test statistic for homogeneous... |
| vc_score_perm | Computes variance component test statistic and its permuted... |
| vc_test_asym | Computes variance component test statistic for longitudinal |
| vc_test_perm | Permutation-based variance component test statistic |
| voom_weights | Precision weights accounting for heteroscedasticity in... |
