timereg: Flexible Regression Models for Survival Data

Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparametric proportional odds model, fast cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling. PLS for the additive risk model. Lasso in the 'ahaz' package.

AuthorThomas Scheike with contributions from Torben Martinussen, Jeremy Silver and Klaus Holst
Date of publication2016-10-06 13:17:44
MaintainerThomas Scheike <ts@biostat.ku.dk>
LicenseGPL (>= 2)
Version1.9.0
https://github.com/scheike/timereg.git

View on CRAN

Man pages

aalen: Fit additive hazards model

bmt: The Bone Marrow Transplant Data

cd4: The multicenter AIDS cohort study

comp.risk: Competings Risks Regression

const: Identifies parametric terms of model

cox: Identifies proportional excess terms of model

cox.aalen: Fit Cox-Aalen survival model

cox.ipw: Missing data IPW Cox

csl: CSL liver chirrosis data

cum.residuals: Model validation based on cumulative residuals

diabetes: The Diabetic Retinopathy Data

dynreg: Fit time-varying regression model

event.split: EventSplit (SurvSplit).

Gprop.odds: Fit Generalized Semiparametric Proportional 0dds Model

internal-addreg: For internal use

krylow.pls: Fits Krylow based PLS for additive hazards model

melanoma: The Melanoma Survival Data

mela.pop: Melanoma data and Danish population mortality by age and sex

pe.sasieni: Fits Proportional excess hazards model with fixed offsets

plot.aalen: Plots estimates and test-processes

plot.cum.residuals: Plots cumulative residuals

plot.dynreg: Plots estimates and test-processes

predict.timereg: Predictions for Survival and Competings Risks Regression for...

prep.comp.risk: Set up weights for delayed-entry competing risks data for...

print.aalen: Prints call

prop: Identifies the multiplicative terms in Cox-Aalen model and...

prop.excess: Fits Proportional excess hazards model

prop.odds: Fit Semiparametric Proportional 0dds Model

prop.odds.subdist: Fit Semiparametric Proportional 0dds Model for the competing...

res.mean: Residual mean life (restricted)

restricted.residual.mean: Estimates restricted residual mean for Cox or Aalen model

summary.aalen: Prints summary statistics

summary.cum.residuals: Prints summary statistics for goodness-of-fit tests based on...

timecox: Fit Cox model with partly timevarying effects.

TRACE: The TRACE study group of myocardial infarction

two.stage.reg: Fit Clayton-Oakes-Glidden Two-Stage model

wald.test: Makes wald test

Files in this package

timereg
timereg/inst
timereg/inst/CITATION
timereg/src
timereg/src/comprisk.c
timereg/src/matrix.c
timereg/src/Makevars
timereg/src/comptest.c
timereg/src/cox-aalen-lwy-resamp.c
timereg/src/Gprop-odds.c
timereg/src/cox-aalen-stratum.c
timereg/src/dynadd.c
timereg/src/cox-aalen.c
timereg/src/pe-sasieni.c
timereg/src/aalenC.c
timereg/src/additive-compSs.c
timereg/src/unifConfBandResampling.c
timereg/src/Gprop-odds-subdist.c
timereg/src/breslow.c
timereg/src/pava.c
timereg/src/aalen.c
timereg/src/mgresid.c
timereg/src/timecox.c
timereg/src/smooth2.c
timereg/src/pred.c
timereg/src/ipcw-residualmean.c
timereg/src/prop-excess.c
timereg/src/additive-pls-new.c
timereg/src/prop-odds.c
timereg/src/two-stage-reg.c
timereg/src/comptest-cmprsk.c
timereg/src/prop-odds-subdist2.c
timereg/src/aalen-test.c
timereg/src/smooth.c
timereg/src/kim-kim.c
timereg/src/matrix.h
timereg/NAMESPACE
timereg/data
timereg/data/mypbc.txt.gz
timereg/data/cd4.txt.gz
timereg/data/csl.txt.gz
timereg/data/TRACE.txt.gz
timereg/data/sTRACE.txt.gz
timereg/data/mela.pop.txt.gz
timereg/data/diabetes.txt.gz
timereg/data/melanoma.txt.gz
timereg/data/bmt.txt.gz
timereg/data/tTRACE.txt.gz
timereg/R
timereg/R/kmplot.r
timereg/R/event.r
timereg/R/comprisk.ipw.r
timereg/R/mgresid.r
timereg/R/base.r
timereg/R/krylow.pls.r
timereg/R/prop-excess.r
timereg/R/additive-compSs.r
timereg/R/new.dynreg.r
timereg/R/new.timecox.r
timereg/R/cox.ipw.r
timereg/R/aalen.r
timereg/R/event.split.r
timereg/R/new.cox-aalen.r
timereg/R/qcut.r
timereg/R/prop-odds.r
timereg/R/prop-odds-subdist.r
timereg/R/Gprop-odds.r
timereg/R/new.pe-sasieni.r
timereg/R/clusterindex-reshape.r
timereg/R/glm-comprisk.r
timereg/R/Cpred.r
timereg/R/read-design.r
timereg/R/new.aalen.r
timereg/R/comprisk.r
timereg/R/ipcw-residualmean.r
timereg/R/cox.marg.r
timereg/R/aalenC.r
timereg/R/dynadd.r
timereg/R/residualsTimereg.r
timereg/R/two-stage-reg.r
timereg/R/predict-timereg.r
timereg/R/cox-aalen.r
timereg/R/timecox.r
timereg/R/aalen-des.r
timereg/R/plots.r
timereg/R/new.prop-excess.r
timereg/R/restricted.residual.mean.r
timereg/R/Csmooth.r
timereg/MD5
timereg/DESCRIPTION
timereg/man
timereg/man/print.aalen.Rd timereg/man/prop.Rd timereg/man/plot.aalen.Rd timereg/man/TRACE.Rd timereg/man/bmt.Rd timereg/man/summary.aalen.Rd timereg/man/predict.timereg.Rd timereg/man/cd4.Rd timereg/man/restricted.residual.mean.Rd timereg/man/cum.residuals.Rd timereg/man/pe.sasieni.Rd timereg/man/two.stage.reg.Rd timereg/man/plot.cum.residuals.Rd timereg/man/comp.risk.Rd timereg/man/csl.Rd timereg/man/summary.cum.residuals.Rd timereg/man/Gprop.odds.Rd timereg/man/dynreg.Rd timereg/man/const.Rd timereg/man/prep.comp.risk.Rd timereg/man/prop.odds.subdist.Rd timereg/man/wald.test.Rd timereg/man/timecox.Rd timereg/man/cox.Rd timereg/man/plot.dynreg.Rd timereg/man/aalen.Rd timereg/man/prop.odds.Rd timereg/man/diabetes.Rd timereg/man/cox.aalen.Rd timereg/man/cox.ipw.Rd timereg/man/prop.excess.Rd timereg/man/krylow.pls.Rd timereg/man/res.mean.Rd timereg/man/event.split.Rd timereg/man/melanoma.Rd timereg/man/internal-addreg.Rd timereg/man/mela.pop.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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