timereg: Flexible Regression Models for Survival Data

Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparametric proportional odds model, fast cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling. PLS for the additive risk model. Lasso in the 'ahaz' package.

Install the latest version of this package by entering the following in R:
install.packages("timereg")
AuthorThomas Scheike with contributions from Torben Martinussen, Jeremy Silver and Klaus Holst
Date of publication2016-10-06 13:17:44
MaintainerThomas Scheike <ts@biostat.ku.dk>
LicenseGPL (>= 2)
Version1.9.0
https://github.com/scheike/timereg.git

View on CRAN

Man pages

aalen: Fit additive hazards model

bmt: The Bone Marrow Transplant Data

cd4: The multicenter AIDS cohort study

comp.risk: Competings Risks Regression

const: Identifies parametric terms of model

cox: Identifies proportional excess terms of model

cox.aalen: Fit Cox-Aalen survival model

cox.ipw: Missing data IPW Cox

csl: CSL liver chirrosis data

cum.residuals: Model validation based on cumulative residuals

diabetes: The Diabetic Retinopathy Data

dynreg: Fit time-varying regression model

event.split: EventSplit (SurvSplit).

Gprop.odds: Fit Generalized Semiparametric Proportional 0dds Model

internal-addreg: For internal use

krylow.pls: Fits Krylow based PLS for additive hazards model

melanoma: The Melanoma Survival Data

mela.pop: Melanoma data and Danish population mortality by age and sex

pe.sasieni: Fits Proportional excess hazards model with fixed offsets

plot.aalen: Plots estimates and test-processes

plot.cum.residuals: Plots cumulative residuals

plot.dynreg: Plots estimates and test-processes

predict.timereg: Predictions for Survival and Competings Risks Regression for...

prep.comp.risk: Set up weights for delayed-entry competing risks data for...

print.aalen: Prints call

prop: Identifies the multiplicative terms in Cox-Aalen model and...

prop.excess: Fits Proportional excess hazards model

prop.odds: Fit Semiparametric Proportional 0dds Model

prop.odds.subdist: Fit Semiparametric Proportional 0dds Model for the competing...

res.mean: Residual mean life (restricted)

restricted.residual.mean: Estimates restricted residual mean for Cox or Aalen model

summary.aalen: Prints summary statistics

summary.cum.residuals: Prints summary statistics for goodness-of-fit tests based on...

timecox: Fit Cox model with partly timevarying effects.

TRACE: The TRACE study group of myocardial infarction

two.stage.reg: Fit Clayton-Oakes-Glidden Two-Stage model

wald.test: Makes wald test

Functions

aalen Man page
aalenBase Man page
aalenBaseC Man page
aalen.des Man page
aalen.des2 Man page
additive.compSs Man page
as.character.Event Man page
as.matrix.Event Man page
bmt Man page
cd4 Man page
check.missing Man page
cluster.index.timereg Man page
coef.aalen Man page
coefBase Man page
coef.comprisk Man page
coef.comprisk.ipw Man page
coef.cox.aalen Man page
coef.cox.ipw Man page
coef.cox.marg Man page
coef.dynreg Man page
coef.resmean Man page
coef.timecox Man page
coef.two.stage Man page
comp.risk Man page
comprisk.ipw Man page
const Man page
cox Man page
cox.aalen Man page
cox.aalenBase Man page
cox.ipw Man page
cox.marg Man page
Cpred Man page
csl Man page
Csmooth2B Man page
CsmoothB Man page
cum.residuals Man page
des.aalen Man page
diabetes Man page
dynreg Man page
dynregBase Man page
Event Man page
[.Event Man page
event.split Man page
faster.reshape Man page
format.Event Man page
Gprop.odds Man page
is.diag Man page
kernel Man page
kmplot Man page
krylow.pls Man page
localTimeReg Man page
melanoma Man page
mela.pop Man page
mypbc Man page
nameestimate Man page
namematrix Man page
names2formula Man page
pava Man page
percen Man page
pe.sasieni Man page
plot.aalen Man page
plot.comprisk Man page
plot.cox.aalen Man page
plot.cox.aalen2 Man page
plot.cum.residuals Man page
plot.cums Man page
plot.dynreg Man page
plot.predict Man page
plot.predict.comprisk Man page
plot.predict.timereg Man page
plot.prop.excess Man page
plot.resmean Man page
plot.restricted.residual.mean Man page
plotScore Man page
plot.timecox Man page
plot.two.stage Man page
pred.cum Man page
pred.des Man page
predict.aalen Man page
predict.comprisk Man page
predict.cox.aalen Man page
predictpropodds Man page
predict.timereg Man page
predict.two.stage Man page
pred.stratKM Man page
prep.comp.risk Man page
prep.glm.comprisk Man page
print.aalen Man page
print.comprisk Man page
print.comprisk.ipw Man page
print.cox.aalen Man page
print.cox.ipw Man page
print.cox.marg Man page
print.cum.residuals Man page
print.dynreg Man page
print.Event Man page
print.pe.sasieni Man page
print.predict.timereg Man page
print.prop.excess Man page
print.resmean Man page
print.timecox Man page
print.two.stage Man page
prop Man page
prop.excess Man page
prop.excessBase Man page
prop.odds Man page
prop.odds.gam Man page
prop.odds.subdist Man page
prop.odds.subdist.ipw Man page
pval Man page
qcut Man page
rbind.Event Man page
read-design Man page
read.design Man page
read.surv Man page
residualsTimereg Man page
res.mean Man page
restricted.residual.mean Man page
risk.index Man page
rm.missing Man page
semiaalen Man page
semicox Man page
semiregBase Man page
sindex.prodlim Man page
slaaop Man page
sTRACE Man page
summary.aalen Man page
summary.comprisk Man page
summary.comprisk.ipw Man page
summary.cox.aalen Man page
summary.cox.ipw Man page
summary.cox.marg Man page
summary.cum.residuals Man page
summary.dynreg Man page
summary.Event Man page
summary.pe-sasieni Man page
summary.pe.sasieni Man page
summary.predict.timereg Man page
summary.prop.excess Man page
summary.resmean Man page
summary.restricted.residual.mean Man page
summary.timecox Man page
summary.two.stage Man page
timecox Man page
timecoxBase Man page
timereg.formula Man page
timetest Man page
TRACE Man page
tTRACE Man page
twin.clustertrunc Man page
two.stage Man page
vcov.aalen Man page
vcov.comp.risk Man page
vcov.cox.aalen Man page
vcov.two.stage Man page
wald.test Man page

Files

inst
inst/CITATION
src
src/comprisk.c
src/matrix.c
src/Makevars
src/comptest.c
src/cox-aalen-lwy-resamp.c
src/Gprop-odds.c
src/cox-aalen-stratum.c
src/dynadd.c
src/cox-aalen.c
src/pe-sasieni.c
src/aalenC.c
src/additive-compSs.c
src/unifConfBandResampling.c
src/Gprop-odds-subdist.c
src/breslow.c
src/pava.c
src/aalen.c
src/mgresid.c
src/timecox.c
src/smooth2.c
src/pred.c
src/ipcw-residualmean.c
src/prop-excess.c
src/additive-pls-new.c
src/prop-odds.c
src/two-stage-reg.c
src/comptest-cmprsk.c
src/prop-odds-subdist2.c
src/aalen-test.c
src/smooth.c
src/kim-kim.c
src/matrix.h
NAMESPACE
data
data/mypbc.txt.gz
data/cd4.txt.gz
data/csl.txt.gz
data/TRACE.txt.gz
data/sTRACE.txt.gz
data/mela.pop.txt.gz
data/diabetes.txt.gz
data/melanoma.txt.gz
data/bmt.txt.gz
data/tTRACE.txt.gz
R
R/kmplot.r R/event.r R/comprisk.ipw.r R/mgresid.r R/base.r R/krylow.pls.r R/prop-excess.r R/additive-compSs.r R/new.dynreg.r R/new.timecox.r R/cox.ipw.r R/aalen.r R/event.split.r R/new.cox-aalen.r R/qcut.r R/prop-odds.r R/prop-odds-subdist.r R/Gprop-odds.r R/new.pe-sasieni.r R/clusterindex-reshape.r R/glm-comprisk.r R/Cpred.r R/read-design.r R/new.aalen.r R/comprisk.r R/ipcw-residualmean.r R/cox.marg.r R/aalenC.r R/dynadd.r R/residualsTimereg.r R/two-stage-reg.r R/predict-timereg.r R/cox-aalen.r R/timecox.r R/aalen-des.r R/plots.r R/new.prop-excess.r R/restricted.residual.mean.r R/Csmooth.r
MD5
DESCRIPTION
man
man/print.aalen.Rd man/prop.Rd man/plot.aalen.Rd man/TRACE.Rd man/bmt.Rd man/summary.aalen.Rd man/predict.timereg.Rd man/cd4.Rd man/restricted.residual.mean.Rd man/cum.residuals.Rd man/pe.sasieni.Rd man/two.stage.reg.Rd man/plot.cum.residuals.Rd man/comp.risk.Rd man/csl.Rd man/summary.cum.residuals.Rd man/Gprop.odds.Rd man/dynreg.Rd man/const.Rd man/prep.comp.risk.Rd man/prop.odds.subdist.Rd man/wald.test.Rd man/timecox.Rd man/cox.Rd man/plot.dynreg.Rd man/aalen.Rd man/prop.odds.Rd man/diabetes.Rd man/cox.aalen.Rd man/cox.ipw.Rd man/prop.excess.Rd man/krylow.pls.Rd man/res.mean.Rd man/event.split.Rd man/melanoma.Rd man/internal-addreg.Rd man/mela.pop.Rd

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