timereg: Flexible Regression Models for Survival Data

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Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparametric proportional odds model, fast cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling. PLS for the additive risk model. Lasso in the 'ahaz' package.

Author
Thomas Scheike with contributions from Torben Martinussen, Jeremy Silver and Klaus Holst
Date of publication
2016-10-06 13:17:44
Maintainer
Thomas Scheike <ts@biostat.ku.dk>
License
GPL (>= 2)
Version
1.9.0
URLs

View on CRAN

Man pages

aalen
Fit additive hazards model
bmt
The Bone Marrow Transplant Data
cd4
The multicenter AIDS cohort study
comp.risk
Competings Risks Regression
const
Identifies parametric terms of model
cox
Identifies proportional excess terms of model
cox.aalen
Fit Cox-Aalen survival model
cox.ipw
Missing data IPW Cox
csl
CSL liver chirrosis data
cum.residuals
Model validation based on cumulative residuals
diabetes
The Diabetic Retinopathy Data
dynreg
Fit time-varying regression model
event.split
EventSplit (SurvSplit).
Gprop.odds
Fit Generalized Semiparametric Proportional 0dds Model
internal-addreg
For internal use
krylow.pls
Fits Krylow based PLS for additive hazards model
melanoma
The Melanoma Survival Data
mela.pop
Melanoma data and Danish population mortality by age and sex
pe.sasieni
Fits Proportional excess hazards model with fixed offsets
plot.aalen
Plots estimates and test-processes
plot.cum.residuals
Plots cumulative residuals
plot.dynreg
Plots estimates and test-processes
predict.timereg
Predictions for Survival and Competings Risks Regression for...
prep.comp.risk
Set up weights for delayed-entry competing risks data for...
print.aalen
Prints call
prop
Identifies the multiplicative terms in Cox-Aalen model and...
prop.excess
Fits Proportional excess hazards model
prop.odds
Fit Semiparametric Proportional 0dds Model
prop.odds.subdist
Fit Semiparametric Proportional 0dds Model for the competing...
res.mean
Residual mean life (restricted)
restricted.residual.mean
Estimates restricted residual mean for Cox or Aalen model
summary.aalen
Prints summary statistics
summary.cum.residuals
Prints summary statistics for goodness-of-fit tests based on...
timecox
Fit Cox model with partly timevarying effects.
TRACE
The TRACE study group of myocardial infarction
two.stage.reg
Fit Clayton-Oakes-Glidden Two-Stage model
wald.test
Makes wald test

Files in this package

timereg
timereg/inst
timereg/inst/CITATION
timereg/src
timereg/src/comprisk.c
timereg/src/matrix.c
timereg/src/Makevars
timereg/src/comptest.c
timereg/src/cox-aalen-lwy-resamp.c
timereg/src/Gprop-odds.c
timereg/src/cox-aalen-stratum.c
timereg/src/dynadd.c
timereg/src/cox-aalen.c
timereg/src/pe-sasieni.c
timereg/src/aalenC.c
timereg/src/additive-compSs.c
timereg/src/unifConfBandResampling.c
timereg/src/Gprop-odds-subdist.c
timereg/src/breslow.c
timereg/src/pava.c
timereg/src/aalen.c
timereg/src/mgresid.c
timereg/src/timecox.c
timereg/src/smooth2.c
timereg/src/pred.c
timereg/src/ipcw-residualmean.c
timereg/src/prop-excess.c
timereg/src/additive-pls-new.c
timereg/src/prop-odds.c
timereg/src/two-stage-reg.c
timereg/src/comptest-cmprsk.c
timereg/src/prop-odds-subdist2.c
timereg/src/aalen-test.c
timereg/src/smooth.c
timereg/src/kim-kim.c
timereg/src/matrix.h
timereg/NAMESPACE
timereg/data
timereg/data/mypbc.txt.gz
timereg/data/cd4.txt.gz
timereg/data/csl.txt.gz
timereg/data/TRACE.txt.gz
timereg/data/sTRACE.txt.gz
timereg/data/mela.pop.txt.gz
timereg/data/diabetes.txt.gz
timereg/data/melanoma.txt.gz
timereg/data/bmt.txt.gz
timereg/data/tTRACE.txt.gz
timereg/R
timereg/R/kmplot.r
timereg/R/event.r
timereg/R/comprisk.ipw.r
timereg/R/mgresid.r
timereg/R/base.r
timereg/R/krylow.pls.r
timereg/R/prop-excess.r
timereg/R/additive-compSs.r
timereg/R/new.dynreg.r
timereg/R/new.timecox.r
timereg/R/cox.ipw.r
timereg/R/aalen.r
timereg/R/event.split.r
timereg/R/new.cox-aalen.r
timereg/R/qcut.r
timereg/R/prop-odds.r
timereg/R/prop-odds-subdist.r
timereg/R/Gprop-odds.r
timereg/R/new.pe-sasieni.r
timereg/R/clusterindex-reshape.r
timereg/R/glm-comprisk.r
timereg/R/Cpred.r
timereg/R/read-design.r
timereg/R/new.aalen.r
timereg/R/comprisk.r
timereg/R/ipcw-residualmean.r
timereg/R/cox.marg.r
timereg/R/aalenC.r
timereg/R/dynadd.r
timereg/R/residualsTimereg.r
timereg/R/two-stage-reg.r
timereg/R/predict-timereg.r
timereg/R/cox-aalen.r
timereg/R/timecox.r
timereg/R/aalen-des.r
timereg/R/plots.r
timereg/R/new.prop-excess.r
timereg/R/restricted.residual.mean.r
timereg/R/Csmooth.r
timereg/MD5
timereg/DESCRIPTION
timereg/man
timereg/man/print.aalen.Rd
timereg/man/prop.Rd
timereg/man/plot.aalen.Rd
timereg/man/TRACE.Rd
timereg/man/bmt.Rd
timereg/man/summary.aalen.Rd
timereg/man/predict.timereg.Rd
timereg/man/cd4.Rd
timereg/man/restricted.residual.mean.Rd
timereg/man/cum.residuals.Rd
timereg/man/pe.sasieni.Rd
timereg/man/two.stage.reg.Rd
timereg/man/plot.cum.residuals.Rd
timereg/man/comp.risk.Rd
timereg/man/csl.Rd
timereg/man/summary.cum.residuals.Rd
timereg/man/Gprop.odds.Rd
timereg/man/dynreg.Rd
timereg/man/const.Rd
timereg/man/prep.comp.risk.Rd
timereg/man/prop.odds.subdist.Rd
timereg/man/wald.test.Rd
timereg/man/timecox.Rd
timereg/man/cox.Rd
timereg/man/plot.dynreg.Rd
timereg/man/aalen.Rd
timereg/man/prop.odds.Rd
timereg/man/diabetes.Rd
timereg/man/cox.aalen.Rd
timereg/man/cox.ipw.Rd
timereg/man/prop.excess.Rd
timereg/man/krylow.pls.Rd
timereg/man/res.mean.Rd
timereg/man/event.split.Rd
timereg/man/melanoma.Rd
timereg/man/internal-addreg.Rd
timereg/man/mela.pop.Rd