timereg: Flexible Regression Models for Survival Data
Version 1.9.1

Programs for Martinussen and Scheike (2006), `Dynamic Regression Models for Survival Data', Springer Verlag. Plus more recent developments. Additive survival model, semiparametric proportional odds model, fast cumulative residuals, excess risk models and more. Flexible competing risks regression including GOF-tests. Two-stage frailty modelling. PLS for the additive risk model. Lasso in the 'ahaz' package.

AuthorThomas Scheike with contributions from Torben Martinussen, Jeremy Silver and Klaus Holst
Date of publication2017-05-21 07:51:40 UTC
MaintainerThomas Scheike <ts@biostat.ku.dk>
LicenseGPL (>= 2)
Version1.9.1
URL https://github.com/scheike/timereg.git
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("timereg")

Popular man pages

cd4: The multicenter AIDS cohort study
cum.residuals: Model validation based on cumulative residuals
pe.sasieni: Fits Proportional excess hazards model with fixed offsets
plot.cum.residuals: Plots cumulative residuals
predict.timereg: Predictions for Survival and Competings Risks Regression for...
prep.comp.risk: Set up weights for delayed-entry competing risks data for...
TRACE: The TRACE study group of myocardial infarction
See all...

All man pages Function index File listing

Man pages

aalen: Fit additive hazards model
bmt: The Bone Marrow Transplant Data
cd4: The multicenter AIDS cohort study
comp.risk: Competings Risks Regression
const: Identifies parametric terms of model
cox: Identifies proportional excess terms of model
cox.aalen: Fit Cox-Aalen survival model
cox.ipw: Missing data IPW Cox
csl: CSL liver chirrosis data
cum.residuals: Model validation based on cumulative residuals
diabetes: The Diabetic Retinopathy Data
dynreg: Fit time-varying regression model
Event: Event history object
event.split: EventSplit (SurvSplit).
Gprop.odds: Fit Generalized Semiparametric Proportional 0dds Model
internal-addreg: For internal use
krylow.pls: Fits Krylow based PLS for additive hazards model
melanoma: The Melanoma Survival Data
mela.pop: Melanoma data and Danish population mortality by age and sex
mypbc: my version of the PBC data of the survival package
pava.pred: Make predictions of predict functions in rows mononotone
pc.hazard: Simulation of Piecewise constant hazard model (Cox).
pe.sasieni: Fits Proportional excess hazards model with fixed offsets
plot.aalen: Plots estimates and test-processes
plot.cum.residuals: Plots cumulative residuals
plot.dynreg: Plots estimates and test-processes
predict.timereg: Predictions for Survival and Competings Risks Regression for...
prep.comp.risk: Set up weights for delayed-entry competing risks data for...
print.aalen: Prints call
prop: Identifies the multiplicative terms in Cox-Aalen model and...
prop.excess: Fits Proportional excess hazards model
prop.odds: Fit Semiparametric Proportional 0dds Model
prop.odds.subdist: Fit Semiparametric Proportional 0dds Model for the competing...
qcut: Cut a variable
res.mean: Residual mean life (restricted)
restricted.residual.mean: Estimates restricted residual mean for Cox or Aalen model
sim.cox: Simulation of output from Cox model.
summary.aalen: Prints summary statistics
summary.cum.residuals: Prints summary statistics for goodness-of-fit tests based on...
timecox: Fit Cox model with partly timevarying effects.
TRACE: The TRACE study group of myocardial infarction
two.stage: Fit Clayton-Oakes-Glidden Two-Stage model
wald.test: Makes wald test

Functions

Cpred Man page Source code
Csmooth2B Man page Source code
CsmoothB Man page Source code
Event Man page Source code
Gprop.odds Man page Source code
TRACE Man page
[.Event Man page
aalen Man page Source code
aalen.des Man page Source code Source code
aalen.des2 Man page Source code
aalenBase Man page Source code
aalenBaseC Man page Source code
additive.compSs Man page Source code
as.character.Event Man page Source code
as.matrix.Event Man page Source code
bmt Man page
cause.pchazard.sim Man page Source code
cd4 Man page
check.missing Man page Source code
cluster.index.timereg Man page Source code
coef.aalen Man page Source code
coef.comprisk Man page Source code
coef.comprisk.ipw Man page Source code
coef.cox.aalen Man page Source code
coef.cox.ipw Man page Source code
coef.cox.marg Man page Source code
coef.dynreg Man page Source code
coef.resmean Man page Source code
coef.timecox Man page Source code
coef.two.stage Man page Source code
coefBase Man page Source code
coefcox Man page Source code
comp.risk Man page Source code
comprisk.ipw Man page Source code
const Man page Source code
cox Man page Source code
cox.aalen Man page Source code
cox.aalenBase Man page Source code
cox.ipw Man page Source code
cox.marg Man page Source code
csl Man page
cum.residuals Man page Source code
des.aalen Man page Source code
diabetes Man page
dynreg Man page Source code
dynregBase Man page Source code
event.split Man page Source code
faster.reshape Man page
format.Event Man page Source code
is.diag Man page Source code
kernel Man page
kmplot Man page Source code
krylow.pls Man page Source code
localTimeReg Man page Source code
mela.pop Man page
melanoma Man page
mypbc Man page
nameestimate Man page Source code Source code
namematrix Man page Source code Source code
names2formula Man page Source code
pava Man page Source code
pava.pred Man page Source code
pc.hazard Man page Source code
pchazard.sim Man page Source code
pe.sasieni Man page Source code
percen Man page Source code Source code
plot.aalen Man page Source code
plot.comprisk Man page Source code
plot.cox.aalen Man page
plot.cox.aalen2 Man page
plot.cum.residuals Man page
plot.cums Man page Source code
plot.dynreg Man page Source code
plot.predict Man page
plot.predict.comprisk Man page
plot.predict.timereg Man page Source code
plot.prop.excess Man page
plot.resmean Man page Source code
plot.restricted.residual.mean Man page Source code
plot.timecox Man page
plot.two.stage Man page Source code
plotScore Man page Source code
pred.cum Man page Source code
pred.des Man page Source code
pred.stratKM Man page Source code
predict.aalen Man page Source code
predict.comprisk Man page Source code
predict.cox.aalen Man page Source code
predict.timereg Man page Source code
predict.two.stage Man page Source code
predictpropodds Man page Source code
prep.comp.risk Man page Source code
prep.glm.comprisk Man page Source code
print.Event Man page Source code
print.aalen Man page
print.comprisk Man page Source code
print.comprisk.ipw Man page Source code
print.cox.aalen Man page
print.cox.ipw Man page Source code
print.cox.marg Man page Source code
print.cum.residuals Man page
print.dynreg Man page
print.pe.sasieni Man page Source code
print.predict.timereg Man page Source code
print.prop.excess Man page
print.resmean Man page Source code
print.timecox Man page
print.two.stage Man page Source code
prop Man page Source code
prop.excess Man page Source code
prop.excessBase Man page Source code
prop.odds Man page Source code
prop.odds.gam Man page Source code
prop.odds.subdist Man page Source code
prop.odds.subdist.ipw Man page Source code
pval Man page Man page Source code Source code
qcut Man page Source code
rbind.Event Man page Source code
read-design Man page
read.design Man page Source code
read.surv Man page Source code
res.mean Man page Source code
residualsTimereg Man page Source code
restricted.residual.mean Man page Source code
risk.index Man page Source code
rm.missing Man page Source code
sTRACE Man page
semiaalen Man page Source code
semicox Man page Source code
semiregBase Man page Source code
sim.cox Man page Source code
sindex.prodlim Man page Source code
slaaop Man page Source code
summary.Event Man page Source code
summary.aalen Man page
summary.comprisk Man page Source code
summary.comprisk.ipw Man page Source code
summary.cox.aalen Man page
summary.cox.ipw Man page Source code
summary.cox.marg Man page Source code
summary.cum.residuals Man page
summary.dynreg Man page
summary.pe-sasieni Man page
summary.pe.sasieni Man page Source code
summary.predict.timereg Man page Source code
summary.prop.excess Man page
summary.resmean Man page Source code
summary.restricted.residual.mean Man page Source code
summary.timecox Man page
summary.two.stage Man page Source code
tTRACE Man page
timecox Man page Source code
timecoxBase Man page Source code
timereg.formula Man page Source code
timetest Man page Source code
twin.clustertrunc Man page
two.stage Man page Source code
vcov.aalen Man page Source code
vcov.comp.risk Man page Source code
vcov.cox.aalen Man page Source code
vcov.resmean Source code
vcov.two.stage Man page Source code
wald.test Man page Source code

Files

inst
inst/CITATION
src
src/comprisk.c
src/matrix.c
src/Makevars
src/comptest.c
src/timeregister.c
src/cox-aalen-lwy-resamp.c
src/Gprop-odds.c
src/cox-aalen-stratum.c
src/dynadd.c
src/cox-aalen.c
src/pe-sasieni.c
src/aalenC.c
src/additive-compSs.c
src/unifConfBandResampling.c
src/Gprop-odds-subdist.c
src/breslow.c
src/pava.c
src/aalen.c
src/mgresid.c
src/timecox.c
src/smooth2.c
src/pred.c
src/ipcw-residualmean.c
src/prop-excess.c
src/additive-pls-new.c
src/prop-odds.c
src/two-stage-reg.c
src/comptest-cmprsk.c
src/prop-odds-subdist2.c
src/aalen-test.c
src/smooth.c
src/kim-kim.c
src/matrix.h
NAMESPACE
data
data/mypbc.txt.gz
data/cd4.txt.gz
data/csl.txt.gz
data/TRACE.txt.gz
data/sTRACE.txt.gz
data/mela.pop.txt.gz
data/diabetes.txt.gz
data/melanoma.txt.gz
data/bmt.txt.gz
data/tTRACE.txt.gz
R
R/kmplot.r
R/event.r
R/comprisk.ipw.r
R/timereg-copy-package.R
R/mgresid.r
R/base.r
R/krylow.pls.r
R/prop-excess.r
R/additive-compSs.r
R/new.dynreg.r
R/new.timecox.r
R/cox.ipw.r
R/aalen.r
R/event.split.r
R/new.cox-aalen.r
R/qcut.r
R/prop-odds.r
R/prop-odds-subdist.r
R/Gprop-odds.r
R/new.pe-sasieni.r
R/clusterindex-reshape.r
R/glm-comprisk.r
R/Cpred.r
R/read-design.r
R/new.aalen.r
R/comprisk.r
R/ipcw-residualmean.r
R/cox.marg.r
R/aalenC.r
R/dynadd.r
R/residualsTimereg.r
R/two-stage-reg.r
R/sim-pc-hazard.r
R/predict-timereg.r
R/cox-aalen.r
R/timecox.r
R/aalen-des.r
R/plots.r
R/new.prop-excess.r
R/restricted.residual.mean.r
R/Csmooth.r
MD5
DESCRIPTION
man
man/print.aalen.Rd
man/qcut.Rd
man/prop.Rd
man/plot.aalen.Rd
man/mypbc.Rd
man/TRACE.Rd
man/bmt.Rd
man/summary.aalen.Rd
man/predict.timereg.Rd
man/cd4.Rd
man/pc.hazard.Rd
man/sim.cox.Rd
man/restricted.residual.mean.Rd
man/Event.Rd
man/cum.residuals.Rd
man/pe.sasieni.Rd
man/plot.cum.residuals.Rd
man/comp.risk.Rd
man/pava.pred.Rd
man/csl.Rd
man/summary.cum.residuals.Rd
man/Gprop.odds.Rd
man/dynreg.Rd
man/const.Rd
man/prep.comp.risk.Rd
man/prop.odds.subdist.Rd
man/wald.test.Rd
man/timecox.Rd
man/cox.Rd
man/plot.dynreg.Rd
man/aalen.Rd
man/prop.odds.Rd
man/diabetes.Rd
man/cox.aalen.Rd
man/cox.ipw.Rd
man/prop.excess.Rd
man/krylow.pls.Rd
man/res.mean.Rd
man/event.split.Rd
man/two.stage.Rd
man/melanoma.Rd
man/internal-addreg.Rd
man/mela.pop.Rd
timereg documentation built on May 23, 2017, 9:05 a.m.