Description Usage Arguments Value Examples
View source: R/run_tmhmm_on_sequence.R
Run TMHMM directy on one protein sequence
1 2 3 4 | run_tmhmm_on_sequence(
protein_sequence,
folder_name = get_default_tmhmm_folder()
)
|
protein_sequence |
a protein sequence, with the amino acids as capitals, for example 'MEILCEDNTSLSSIPNSL' |
folder_name |
superfolder of TMHMM.
The superfolder's name is |
the topology. The topology is a character string
with the same length as the
protein sequence. The topology consists of the characters
i
('inside'), I
('inside'),
m
('membrane'), M
('membrane'),
o
('outside') and O
('outside')
1 2 3 4 5 6 7 | if (is_tmhmm_installed()) {
protein_sequence <- paste0(
"QEKNWSALLTAVVIILTIAGNILVIMAVSLEKKLQNATNYFLM",
"SLAIADMLLGFLVMPVSMLTILYGYRWP"
)
run_tmhmm_on_sequence(protein_sequence)
}
|
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