R/splod.R

Defines functions splod makeSplodData splodCogFn splodPanelFn

Documented in makeSplodData splod splodCogFn splodPanelFn

#' Default Plot Function for splod
#'
#' Default plot function for splod
#'
#' @param df a subset of data created by \code{\link{makeSplodData}}
#'
#' @return a trellis plot object of a scatterplot for the given subset
#'
#' @references
#' Wilkinson, L., Anushka A., and Grossman, R. L. "Graph-Theoretic Scagnostics." INFOVIS. Vol. 5. 2005.
#'
#' @seealso \code{\link{splodCogFn}}, \code{\link{splod}}, \code{\link{makeSplodData}}
#' @example man-roxygen/ex-splod.R
#'
#' @export
splodPanelFn <- function(df) {
  xyplot(y ~ x, data = df,
    xlab = getSplitVar(df, "xVar"),
    ylab = getSplitVar(df, "yVar")
  )
}

#' Default Cognostics Function for splod
#'
#' Default cognostics function for splod
#'
#' @param df a subset of data created by \code{\link{makeSplodData}}
#'
#' @return a data.frame of scagnostics for the given subset
#'
#' @references
#' Wilkinson, L., Anushka A., and Grossman, R. L. "Graph-Theoretic Scagnostics." INFOVIS. Vol. 5. 2005.
#'
#' @seealso \code{\link{splodPanelFn}}, \code{\link{splod}}, \code{\link{makeSplodData}}
#' @example man-roxygen/ex-splod.R
#'
#' @export
splodCogFn <- function(df) {
  cogScagnostics(df$x, df$y)
}

#' Create Data Plottable by splod
#'
#' Create pairwise scatterplot data plottable by splod
#'
#' @param data a data.frame
#' @param id.vars variables to ignore when computing all pairs of variables
#'
#' @return an object of class 'localDiv' and 'splodDat' that can be passed to \code{\link{splod}}
#'
#' @references
#' Wilkinson, L., Anushka A., and Grossman, R. L. "Graph-Theoretic Scagnostics." INFOVIS. Vol. 5. 2005.
#'
#' @seealso \code{\link{splod}}, \code{\link{splodPanelFn}}
#' @example man-roxygen/ex-splod.R
#'
#' @export
makeSplodData <- function(data, id.vars = NULL) {
  nCol <- ncol(data)
  dataNames <- names(data)

  nonSplodVars <- which(dataNames %in% id.vars)
  tmp <- which(!sapply(data, is.numeric))
  nonSplodVars <- sort(union(nonSplodVars, tmp))

  splodVars <- setdiff(1:nCol, nonSplodVars)
  nSplodVars <- length(splodVars)

  combs <- utils::combn(nSplodVars, 2)

  res <- datadr::ddf(lapply(1:ncol(combs), function(j) {
    yInd <- splodVars[combs[1,j]]
    xInd <- splodVars[combs[2,j]]

    res <- list(
      paste("xVar=", dataNames[xInd], "|yVar=", dataNames[yInd], sep = ""),
      data.frame(x = data[,xInd], y = data[,yInd], data[nonSplodVars], stringsAsFactors = FALSE)
    )
    attr(res[[2]], "split") <- list(xVar = dataNames[xInd], yVar = dataNames[yInd])
    res
  }))

  class(res) <- c("splodDat", class(res))
  res
}

#' Create a Scatterplot Display
#'
#' Create a scatterplot display (splod)
#'
#' @param data a data.frame or an object of class "splodDat"
#' @param id.vars variables to ignore when computing all pairs of variables
#' @param name,desc,cogFn,panelFn,verbose,\ldots parameters passed to \code{\link{makeDisplay}}
#'
#' @return an object of class 'localDiv' that can be passed to \code{\link{splod}}
#'
#' @references
#' Wilkinson, L., Anushka A., and Grossman, R. L. "Graph-Theoretic Scagnostics." INFOVIS. Vol. 5. 2005.
#'
#' @seealso \code{\link{makeDisplay}}, \code{\link{makeSplodData}}, \code{\link{splodPanelFn}}
#' @example man-roxygen/ex-splod.R
#'
#' @export
splod <- function(
  data,
  id.vars = NULL,
  name = NULL,
  desc = NULL,
  cogFn = splodCogFn,
  panelFn = splodPanelFn,
  verbose = TRUE,
  ...
) {
  if(is.null(name))
    name <- paste(deparse(substitute(data)), "_splod", sep = "")

  if(is.null(desc))
    desc <- paste("Scatterplot display")

  if(!inherits(data, "splodDat")) {
    if(verbose)
      message("Transforming data into splodDat format...")
    data <- makeSplodData(data, id.vars = id.vars)
  }

  makeDisplay(data, name = name, cogFn = cogFn, panelFn = panelFn, verbose = verbose, ...)
}

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trelliscope documentation built on Sept. 20, 2017, 5:04 p.m.