get_curve: Compute the model for a given subject's data and best-fit...

In ushr: Understanding Suppression of HIV

Description

This function calculates the biphasic or single phase model given a subject's data and best-fit parameters

Usage

get_curve(data, best_param, param_names, whichcurve = get_biphasic)

Arguments

data	data frame with columns for the subject's identifier ('id') and timing of sampling ('time')
best_param	named numeric vector of best fit parameters obtained from fitting the biphasic or single phase model to the subjects data
param_names	character vector containing the names of the parameters in 'best_param'
whichcurve	character indicating which model function should be used. Use 'get_biphasic' for the biphasic model, or 'get_singlephase' for the single phase model. Defaults to 'get_biphasic'.

Value

data frame with columns for the sampling times ('time'), fitted viral load predictions ('fit'), and the corresponding subject identifier ('id')

Examples

nobs <- 7
example_param <- c(A = 10000, delta = 0.03, B = 1000, gamma = 0.68)

vldata <- get_biphasic(params = example_param, timevec = seq(5, 100, length.out = nobs))

subjectdata <- data.frame(id = 123, time = seq(5, 100, length.out = nobs),
                          vl = 10^ (log10(vldata) + rnorm(nobs, 0, 0.2)))

get_curve(data = subjectdata, best_param = example_param, param_names = names(example_param))

ushr documentation built on April 22, 2020, 1:05 a.m.