vanddraabe: Identification and Statistical Analysis of Conserved Waters Near Proteins

Identify and analyze conserved waters within crystallographic protein structures and molecular dynamics simulation trajectories. Statistical parameters for each water cluster, informative graphs, and a PyMOL session file to visually explore the conserved waters and protein are returned. Hydrophilicity is the propensity of waters to congregate near specific protein atoms and is related to conserved waters. An informatics derived set of hydrophilicity values are provided based on a large, high-quality X-ray protein structure dataset.

Package details

AuthorEmilio Xavier Esposito [aut, cre]
MaintainerEmilio Xavier Esposito <[email protected]>
LicenseMIT + file LICENSE
Version1.1.1
URL http://vanddraabe.com https://github.com/exeResearch/vanddraabe/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("vanddraabe")

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vanddraabe documentation built on June 8, 2019, 1:03 a.m.