MobilityBarplot.summ: Mobility Summary Barplots

In vanddraabe: Identification and Statistical Analysis of Conserved Waters Near Proteins

Description

Mobility summary barplots for PDB structures. The plots are faceted and displays the binned B-value values for all the structures. The counts are presented on a log10 scale. The function will automatically plot ten plots per page.

Usage

MobilityBarplot.summ(data)

Arguments

data	The results from the CleanProteinStructures() function. Will use the binned mobility data.

Author(s)

Emilio Xavier Esposito [e-mail]

See Also

Other plots: BoundWaterEnvPlots, BoundWaterEnvSummaryPlot, BvalueBarplot.summ, BvalueBarplot, ClusterSummaryPlots, MobNormBvalEvalPlots, MobilityBarplot, OccupancyBarplot.summ, OccupancyBarplot, nBvalueBarplot, normBvalueBarplot.summ

Examples

  ## Not run: 
  MobilityBarplot.summ(data)

  ##----- multiple pages
  library(ggforce)
  mob.barplots.summary <- MobilityBarplot.summ(data)
  num.pages <- ceiling(nrow(data$mobility.counts) / 10)

  pdf(file="multiple_pages.pdf", height=11, width=8.5)
  for (page in seq_len(num.pages)) {
    print(mob.barplots.summary +
          ggforce::facet_wrap_paginate(~PDBid,
                                       ncol = 2, nrow = 5, page = page) )
  }
  dev.off()
  
## End(Not run)

vanddraabe documentation built on June 8, 2019, 1:03 a.m.